BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0807200 Os03g0807200|AK103496
         (210 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55340.1  | chr1:20652605-20653469 FORWARD LENGTH=206          142   1e-34
AT3G03880.1  | chr3:998123-999029 FORWARD LENGTH=194              112   1e-25
AT4G20300.2  | chr4:10955813-10958865 FORWARD LENGTH=353           82   3e-16

>AT1G55340.1 | chr1:20652605-20653469 FORWARD LENGTH=206
          Length = 205

 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/212 (45%), Positives = 125/212 (58%), Gaps = 14/212 (6%)

Query: 4   EVKDSRPSRSPGEPNLFLQWGSRKRLRCVKTRDDGSPSPAR-TDVL--RRTIPRVNRPLG 60
           EVK  R S +  E +  LQWG RKR+RC+K + D S +  + TD L  R+ I R      
Sbjct: 3   EVKGQRGSGTT-EADFVLQWGERKRVRCMKVKKDQSLANGKSTDCLTKRKLISRAVSSER 61

Query: 61  GDVAPFRSPRRPSTLNRRKTEPFVSDNRHSMSLSPEK-DRYYSTRGSPFPFEGNGFDFGG 119
           G  +P R   RP+ +    T+  V+  R  M+ SPEK DRYY+TRGS    + +G     
Sbjct: 62  G--SPSRHLNRPNKI----TDSLVNVRRSFMA-SPEKEDRYYTTRGS-MGIDESGKIIKE 113

Query: 120 GMEEKGTTALPRFFISLSNKEKEEDFMAMKGCXXXXXXXXXXXXXXXCLLMVSPGAWLSD 179
            ++E      P+ +I+LSNKEKEEDF+AMKGC                LL+VSPGAWLSD
Sbjct: 114 PVKETKKHVWPKLYIALSNKEKEEDFLAMKGCKLPQRPKKRAKLVQKTLLLVSPGAWLSD 173

Query: 180 LSHERYEVREKKCARKRARGLKALCN-ESDSE 210
           L  ERYEVREKK ++KR RGLKA+ + ESDSE
Sbjct: 174 LCKERYEVREKKTSKKRPRGLKAMGSMESDSE 205



>AT3G03880.1 | chr3:998123-999029 FORWARD LENGTH=194
          Length = 193

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 107/201 (53%), Gaps = 19/201 (9%)

Query: 16  EPNLFLQWGSRKRLRCVKTRDDGSPSPARTDVLRRTIPRVNRPLGGDVAPFRSPRRPSTL 75
           E  +FLQWG++KRLRC++         A+   + R+    +R LG D    +S R     
Sbjct: 6   EQEIFLQWGNKKRLRCLR---------AKAKKISRS-KNSSRFLGQDTVLLQSSRFSRGS 55

Query: 76  NRRKTEPFVSDNRHSMSLSPEKD-RYYSTRGSPFPFEGNGFD---FGGGMEEKGTTALPR 131
                   + D R     SPEK+ RYY+TRG       +  D    G     K  +  P+
Sbjct: 56  EGAILRSGLPDRRRP---SPEKEERYYTTRGVVDNIGKDCLDGNINGEDSNNKEESMWPK 112

Query: 132 FFISLSNKEKEEDFMAMKGCXXXXXXXXXXXXXXXCLLMVSPGAWLSDLSHERYEVREKK 191
            FI+LSNKEKEEDFMAMKGC                LL+VSPG WL+DL  +RY+VR KK
Sbjct: 113 LFITLSNKEKEEDFMAMKGCKPSHRPKKRAKLIQRSLLLVSPGTWLADLCPDRYDVRVKK 172

Query: 192 CARK-RARGLKALCN-ESDSE 210
            ++K RARGLKA+ N E+DS+
Sbjct: 173 SSKKRRARGLKAMGNMETDSD 193



>AT4G20300.2 | chr4:10955813-10958865 FORWARD LENGTH=353
          Length = 352

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 41  SPARTDVLRRTIPRVNRPLGGDVAPFRSPRRPSTLNRRKTEPFVSDNRHSMSLSPEKDRY 100
           SP+R ++  R I R     GG     RSP  P  + +R +   V D R +     ++ ++
Sbjct: 191 SPSRNNINGRMISRS----GGSK---RSPPSPDQIEKRSS---VRDQRQN-GFDHQQQQH 239

Query: 101 YSTRGSPFPFEGNGFDFGGGMEEKGTTALPRFFISLSNKEKEEDFMAMKGCXXXXXXXXX 160
                S    +G+      G  EK T   PR +I+LS KEKEEDF+ MKG          
Sbjct: 240 QRVNRSESTAQGHQEVEINGEREKATQEWPRIYIALSRKEKEEDFLVMKGTKLPHRPRKR 299

Query: 161 XXXXXXCLLMVSPGAWLSDLSHERYEVREKKCARKRA--RGLKALCN-ESDSE 210
                  L    PG WLSDL+  RYEVREKK  +K+   RGLK + N ++DSE
Sbjct: 300 AKNIDKALQFCFPGMWLSDLTKNRYEVREKKNVKKQQKRRGLKGMENMDTDSE 352



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,937,528
Number of extensions: 215907
Number of successful extensions: 470
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 3
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)