BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0806900 Os03g0806900|AK121708
         (126 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G25450.1  | chr5:8857036-8857849 FORWARD LENGTH=123            166   3e-42
AT4G32470.1  | chr4:15669641-15671095 REVERSE LENGTH=123          164   8e-42

>AT5G25450.1 | chr5:8857036-8857849 FORWARD LENGTH=123
          Length = 122

 Score =  166 bits (419), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 99/122 (81%)

Query: 5   LSAFSQWFVNPRRNPLARLHMQAISSRLRKYGLRYDDLYDPKHDLDIKEALERLPREVVD 64
           +++F Q  V+PR+N LAR+HM+++S+RLR+YGLRYDDLYDP +DLDIKEAL RLPRE+VD
Sbjct: 1   MASFLQRLVDPRKNFLARMHMKSVSNRLRRYGLRYDDLYDPLYDLDIKEALNRLPREIVD 60

Query: 65  ARHQRLKRAMDLSMKHQYLSENDQAQQTPFRGYLSDMMDLVXXXXXXXXXXGALPLHQRT 124
           AR+QRL RAMDLSMKH+YL +N QA QTPFR YL DM+ LV          GALPL+QRT
Sbjct: 61  ARNQRLMRAMDLSMKHEYLPDNLQAVQTPFRSYLQDMLALVKRERAEREALGALPLYQRT 120

Query: 125 LP 126
           +P
Sbjct: 121 IP 122



>AT4G32470.1 | chr4:15669641-15671095 REVERSE LENGTH=123
          Length = 122

 Score =  164 bits (416), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 82/126 (65%), Positives = 101/126 (80%), Gaps = 4/126 (3%)

Query: 1   MSSMLSAFSQWFVNPRRNPLARLHMQAISSRLRKYGLRYDDLYDPKHDLDIKEALERLPR 60
           M+S+L AF    ++P++N LAR+HM+AIS+RLR+YGLRYDDLYD  + +DIKEA+ RLPR
Sbjct: 1   MASLLKAF----IDPKKNFLARMHMKAISTRLRRYGLRYDDLYDQYYSMDIKEAMNRLPR 56

Query: 61  EVVDARHQRLKRAMDLSMKHQYLSENDQAQQTPFRGYLSDMMDLVXXXXXXXXXXGALPL 120
           EVVDAR+QRLKRAMDLSMKH+YL ++ QA QTPFRGYL DM+ LV          GALPL
Sbjct: 57  EVVDARNQRLKRAMDLSMKHEYLPKDLQAVQTPFRGYLQDMLALVERESKEREALGALPL 116

Query: 121 HQRTLP 126
           +QRTLP
Sbjct: 117 YQRTLP 122



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,399,998
Number of extensions: 84176
Number of successful extensions: 236
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 2
Length of query: 126
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 39
Effective length of database: 8,721,377
Effective search space: 340133703
Effective search space used: 340133703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)