BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0805900 Os03g0805900|Os03g0805900
(525 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25650.2 | chr4:13081021-13083153 REVERSE LENGTH=560 418 e-117
AT3G44880.1 | chr3:16383858-16386204 FORWARD LENGTH=538 209 3e-54
AT2G24820.1 | chr2:10575038-10576829 FORWARD LENGTH=540 109 4e-24
AT1G44446.1 | chr1:16848664-16851152 REVERSE LENGTH=537 62 9e-10
>AT4G25650.2 | chr4:13081021-13083153 REVERSE LENGTH=560
Length = 559
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/552 (41%), Positives = 306/552 (55%), Gaps = 68/552 (12%)
Query: 18 FRDTVTNPSTPRIPPWRRQWISPTDARRRRLSMPVSAVAAEA-----------PLPRAVD 66
FR + +NPS P ISP R+ S +AV++ P P A+
Sbjct: 22 FRCSFSNPSLP---------ISPNSLITRKSSRFTTAVSSPPSSSAATSTNSPPEPEALF 72
Query: 67 EKETPAAGEERFDWLDQWYPVAPVRDLDKRKPHGKMVMGISVVVWFDGGGGEWRVVDDAC 126
E G ++FDW WYPV P+ DLDK+ PHGK VMGI +VVW+D +W+V+DD C
Sbjct: 73 E-----PGSDKFDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTC 127
Query: 127 PHRLAPLSEGRVDGKGCLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSV 186
PHRLAPLS+GR+D G LQC YHGWCF+G G C+ IPQAP GPPVH +ACVA YPS
Sbjct: 128 PHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPST 187
Query: 187 VQNNILWFYPRSEPEYKEILQRKRPPYIRELDDPSSVINSGVRDLLYGY----RNYLQAI 242
VQ+ I+WF+P S+P+YK I++ +PPYI EL+DPS G RD+ YGY N +
Sbjct: 188 VQHEIIWFWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPYGYDVLVENLMDPA 247
Query: 243 H-----------KQLDASMYVCVF----------------EFDQEGGLPIKMNIEELNIA 275
H + +C+ + D+EGG P+++N+++L+
Sbjct: 248 HVPYAHYGLMRFPKPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINVKKLDNK 307
Query: 276 GFHSNPEENWGYFKFIAPVTLIGS----PFRAKXXXXXXXXXXXXXXXXEVTTVFFCIPV 331
GF S E WGY FIAP S P + ++ +F CIPV
Sbjct: 308 GFFSKQE--WGYSNFIAPCVYRSSTDPLPEQEHEYPAPAASDKAALSKRRLSLIFICIPV 365
Query: 332 SPGRCRVIWANGYNLDGWFDKMIPRWWLHIKTNQVLDSDSSVLHIEERNYAAFGLDNWHK 391
SPGR R+IW N + DK++PRW HI N +LDSD +LH+EER G +NW K
Sbjct: 366 SPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQNTILDSDLHLLHVEERKILERGPENWQK 425
Query: 392 ACYVPTSSDNLIIAFRNWFKKYCNNQVGW---LTPMVNQLPPASTRVEVYERYWSHVMQC 448
AC++PT SD ++ FR WF KY +V W P + LPP R ++++RYWSHV C
Sbjct: 426 ACFIPTKSDANVVTFRRWFNKYSEARVDWRGKFDPFL--LPPTPPREQLFDRYWSHVENC 483
Query: 449 TSCSAALKWMRALEVALQVASVAVVGFLAAGKGTVVTSGVQRXXXXXXXXXXXXXSRWLA 508
+SC A K++ ALEV LQ+ASVA++G +A K T + S V R S+WL+
Sbjct: 484 SSCKKAHKYLNALEVILQIASVAMIGVMAVLKQTTM-SNVARIAVLVAAVLSFAASKWLS 542
Query: 509 GFIEKTFYFEDY 520
FI KTF++ DY
Sbjct: 543 HFIYKTFHYHDY 554
>AT3G44880.1 | chr3:16383858-16386204 FORWARD LENGTH=538
Length = 537
Score = 209 bits (532), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 151/503 (30%), Positives = 230/503 (45%), Gaps = 41/503 (8%)
Query: 47 RLSMPVSAVAAEAPLPRAVDEKETPAAGEE--RFDWLDQWYPVAPVRDLDKRKPHGKMVM 104
R++ P S +++ + ++E+ EE F W D WYPV+ V DLD P ++
Sbjct: 49 RVAAPPSVPTSDSTEEKRIEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLL 108
Query: 105 GISVVVWFDGGGGEWRVVDDACPHRLAPLSEGRVDGKGCLQCAYHGWCFDGHGSCQFIPQ 164
G +V+WFD +W DD CPHRLAPLSEGR+D G LQC+YHGW F G GSC IPQ
Sbjct: 109 GRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQ 168
Query: 165 APALGPPVH--KNSKACVASYPSVVQNNILWFYPRSEPEYKEILQRKRPPYIRELDDPSS 222
A GP K+ +AC +P++V +L+ +P E + + P + D P
Sbjct: 169 AATSGPEARAVKSPRACAIKFPTMVSQGLLFVWP-DENGWDRANSIEPPRLPDDFDKPEF 227
Query: 223 VINSGVRDLLYGYRNYLQAIH--KQLDASMYVCVFEFDQEGGLPIKMNIEELNIAGFH-S 279
+ RDL YGY ++ + +D + + D+ LP K +E GF +
Sbjct: 228 STVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFK--VESSGPWGFQGA 285
Query: 280 NPEENWGYFKFIAPVTLIGSPFRAKXXXXXXXXXXXXXXXXEVTTVFFCIPVSPGRCRVI 339
N + KF+AP + + F IP++PG+ R I
Sbjct: 286 NDDSPRITAKFVAPC------YSMNKIELDAKLPIVGNQKWVIWICSFNIPMAPGKTRSI 339
Query: 340 WANGYNL-------DGWFDKMIPRWWLHIKTNQVLDSDSSVLHIEERNYAAFGLDN---- 388
+ N W+ +++PRW+ H +N V D D VL +E+ + A +++
Sbjct: 340 VCSARNFFQFSVPGPAWW-QVVPRWYEHWTSNLVYDGDMIVLQGQEKVFLAKSMESPDYD 398
Query: 389 ----WHKACYVPTSSDNLIIAFRNWFKKYCNNQVGWL--TPMVNQLPPAS-TRVEVYERY 441
+ K + PT +D ++AFRNW +++ +Q W TP LP T+ ++ +R+
Sbjct: 399 VNKQYTKLTFTPTQADRFVLAFRNWLRRHGKSQPEWFGSTPSNQPLPSTVLTKRQMLDRF 458
Query: 442 WSHVMQCTSCSAALKWMRALEVALQVASVAVVGFLAAGKGTVVTSGVQRXXXXXXXXXXX 501
H C+SC A + L+ L A+V F AA G V S VQ
Sbjct: 459 DQHTQVCSSCKGAYNSFQILKKFLVGATV----FWAATAG--VPSDVQIRLVLAGLSLIS 512
Query: 502 XXSRWLAGFIEKTFYFEDYVLAD 524
S + EK F F DYV ++
Sbjct: 513 AASAYALHEQEKNFVFRDYVHSE 535
>AT2G24820.1 | chr2:10575038-10576829 FORWARD LENGTH=540
Length = 539
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 116/477 (24%), Positives = 182/477 (38%), Gaps = 73/477 (15%)
Query: 19 RDTVTNPSTPRIPPWRRQWISPTDARRRRLSMPVSAVAAEAPLPRAVDEKETPAAGEERF 78
R T T P+ PR+ RR ++ T ++ L +EK A +
Sbjct: 33 RSTCTIPTKPRLRLLRRSAVAGT-------AVSDQTEGGGDVLLNPEEEKRVEVAD---Y 82
Query: 79 DWLDQWYPVAPVRDLDKRKPHGKMVMGISVVVWFDGGGGEWRVVDDACPHRLAPLSEGR- 137
DW ++WYP+ +++ + P G V +V++ DG G R +D CPHRLA LSEG+
Sbjct: 83 DWTEEWYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEG-TLRCYEDRCPHRLAKLSEGQL 141
Query: 138 VDGKGCLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSVVQNNILWFYPR 197
+DG+ L+C YHGW F+G G C IPQ PA ACV +Y ++W +
Sbjct: 142 IDGR--LECLYHGWQFEGEGKCVKIPQLPA---SAKIPKAACVKTYEVKDSQGVVWVWMS 196
Query: 198 SE-PEYKEILQRKRPPYIRELDDPSSVINSGVRDLLYGYRNYLQAIHK--QLDASMYVCV 254
++ P E L P+ P S +L Y + L+ + + S
Sbjct: 197 TKTPPNPEKL-----PWFENFARPGFFDISTTHELPYDHSILLENLMDPAHVPISHDRTD 251
Query: 255 FEFDQEGGLPIKMNIEELNIAGFHSN--PEENWG----YFKFIAPVTLIGS-PFRAKXXX 307
F +E P+ + E + GF E+ G +F AP L + F K
Sbjct: 252 FTAKREDAQPLVFEVTERSNRGFAGTWGREKEGGKGSNLLRFDAPCVLQNNREFEGKDGV 311
Query: 308 XXXXXXXXXXXXXEVTTVFFCIPVSPGRCRVIWANGYNLDGWFDKMIPRWWLHIKTNQVL 367
+ +F C P G+ +I G ++P+W+ H +V
Sbjct: 312 KNY-----------FSGLFLCRPTGQGKSMLIVRFGVTKRSPLVSVLPQWFWHQNACKVF 360
Query: 368 DSDSSVLHIEERNYAAFGLDNWHKACYVP-TSSDNLIIAFRNWFKKYCNN---QVGWLTP 423
+ D L +N K Y+ SSD + +R W K + G T
Sbjct: 361 EQDMGFL--SSQNEVLMKEKVPTKDLYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHRTI 418
Query: 424 MVNQLPPASTRV------------------------EVYERYWSHVMQCTSCSAALK 456
+ ++PP + RY+ H++ C SCS +K
Sbjct: 419 SLPKVPPVVEHAPAGLIAALSASYPAKGGIGTMHAPNLANRYFRHIIHCRSCSNVIK 475
>AT1G44446.1 | chr1:16848664-16851152 REVERSE LENGTH=537
Length = 536
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 84 WYPVAPVRDLDKRKPHGKMVMGISVV----VWFDGGGGEWRVVDDACPHRLAPLSEGRVD 139
WYPVA DL H MV I V F G G+ V + C HR PL G V+
Sbjct: 221 WYPVAFTADLK----HDTMV-PIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVN 275
Query: 140 GKGCLQCAYHGWCFDGHGSCQFIPQAPALGPPVHKNSKACVASYPSVVQNNILWFYPRSE 199
+G +QC YHGW + G C+ +P L K + S P + Q ++W +P E
Sbjct: 276 -EGRIQCPYHGWEYSTDGECKKMPSTKLL--------KVKIKSLPCLEQEGMIWIWPGDE 326
Query: 200 PEYKEILQRKRPP 212
P IL +PP
Sbjct: 327 PP-APILPSLQPP 338
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,021,001
Number of extensions: 530511
Number of successful extensions: 1080
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1068
Number of HSP's successfully gapped: 4
Length of query: 525
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 422
Effective length of database: 8,282,721
Effective search space: 3495308262
Effective search space used: 3495308262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)