BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0804200 Os03g0804200|J065097G18
(127 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55260.1 | chr1:20614663-20616158 FORWARD LENGTH=228 97 3e-21
AT2G44300.1 | chr2:18307468-18308286 REVERSE LENGTH=205 96 5e-21
AT2G44290.1 | chr2:18305418-18306202 REVERSE LENGTH=206 89 8e-19
AT3G58550.1 | chr3:21649506-21650233 REVERSE LENGTH=178 80 2e-16
AT1G03103.1 | chr1:747219-747955 FORWARD LENGTH=172 55 7e-09
AT1G73890.1 | chr1:27787903-27788658 REVERSE LENGTH=194 55 9e-09
AT2G48130.1 | chr2:19685263-19685977 REVERSE LENGTH=184 54 2e-08
AT5G64080.1 | chr5:25645475-25646638 REVERSE LENGTH=183 52 1e-07
AT3G22600.1 | chr3:8006711-8007397 REVERSE LENGTH=171 52 1e-07
AT2G13820.1 | chr2:5774295-5776279 REVERSE LENGTH=170 51 1e-07
AT4G14815.1 | chr4:8505122-8505760 FORWARD LENGTH=157 50 3e-07
AT3G43720.1 | chr3:15615549-15617099 REVERSE LENGTH=194 50 3e-07
AT1G36150.1 | chr1:13528257-13529470 FORWARD LENGTH=257 49 6e-07
>AT1G55260.1 | chr1:20614663-20616158 FORWARD LENGTH=228
Length = 227
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 61/88 (69%), Gaps = 3/88 (3%)
Query: 33 ECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRI 92
EC ++L+ L+TC+ YV A+APT+DCCAG GQV+ S+KC+C+LV+D+D+P LG +I
Sbjct: 75 ECTNQLIELSTCIPYV--GGDAKAPTKDCCAGFGQVIRKSEKCVCILVRDKDDPQLGIKI 132
Query: 93 NVTRAMDLPSGCSIAA-TFSDCPSTSHF 119
N T A LPS C I A +DC S H
Sbjct: 133 NATLAAHLPSACHITAPNITDCISILHL 160
>AT2G44300.1 | chr2:18307468-18308286 REVERSE LENGTH=205
Length = 204
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 33 ECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRI 92
EC ++L+ +ATCL YV+ A++PT DCC+GL QV+ +KKCLCV+++DR++P LG +I
Sbjct: 34 ECTEQLVGMATCLPYVQ--GQAKSPTPDCCSGLKQVLNSNKKCLCVIIQDRNDPDLGLQI 91
Query: 93 NVTRAMDLPSGCSIAATFSDCPSTSHF 119
NV+ A+ LPS C AA + CP+ H
Sbjct: 92 NVSLALALPSVCHAAADVTKCPALLHL 118
>AT2G44290.1 | chr2:18305418-18306202 REVERSE LENGTH=206
Length = 205
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Query: 33 ECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRI 92
EC +L+ +ATCL YV+ KA ++PT DCC+GL QV+ KCLC+++++R++P LG ++
Sbjct: 35 ECTAQLVGMATCLPYVQGKA--KSPTPDCCSGLKQVINSDMKCLCMIIQERNDPDLGLQV 92
Query: 93 NVTRAMDLPSGCSIAATFSDCPSTSHF 119
NV+ A+ LPS C A + CP+ H
Sbjct: 93 NVSLALALPSVCHATADITKCPALLHL 119
>AT3G58550.1 | chr3:21649506-21650233 REVERSE LENGTH=178
Length = 177
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 34 CADKLMALATCLTYVEEKATARAPTRDCCAGLGQVV--AGSKKCLCVLVKDRDEPALGFR 91
C D + L +CL +V KA +AP CC+ L + ++KCLC LVKDRD+P LGF+
Sbjct: 38 CQDAMSDLYSCLPFVTNKA--KAPDSTCCSTLKVKIDKGQTRKCLCTLVKDRDDPGLGFK 95
Query: 92 INVTRAMDLPSGCSIAATFSDCPSTSHF 119
++ RAM LPS C + A S CP H
Sbjct: 96 VDANRAMSLPSACHVPANISQCPDLLHL 123
>AT1G03103.1 | chr1:747219-747955 FORWARD LENGTH=172
Length = 171
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 34 CADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRIN 93
C D L +L+ CL Y+ +++ P+ CC VV S +CLC +V + GF+ N
Sbjct: 25 CRDTLTSLSPCLYYLNGGSSS--PSWSCCRQFSTVVQSSPECLCSVVNSNESSFYGFKFN 82
Query: 94 VTRAMDLPSGCSI 106
T A++LP+ C++
Sbjct: 83 RTLALNLPTACNV 95
>AT1G73890.1 | chr1:27787903-27788658 REVERSE LENGTH=194
Length = 193
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 34 CADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRIN 93
CA +L++LA C +V+ A+ P + CC L Q+ + CLC+ + + + F IN
Sbjct: 30 CASRLLSLAPCGPFVQ--GFAQLPAQPCCDSLNQIYSQEATCLCLFLNNTSTLSPAFPIN 87
Query: 94 VTRAMDLPSGCSIAATFSDCPST 116
T A+ LP C+I A S C S+
Sbjct: 88 QTLALQLPPLCNIPANSSTCSSS 110
>AT2G48130.1 | chr2:19685263-19685977 REVERSE LENGTH=184
Length = 183
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 33 ECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRI 92
C L L+ CL+Y+ +T P++ CC+ L V+ S +C+C V + P +G I
Sbjct: 29 SCVSTLTTLSPCLSYITGNSTT--PSQPCCSRLDSVIKSSPQCICSAV-NSPIPNIGLNI 85
Query: 93 NVTRAMDLPSGCSI 106
N T+A+ LP+ C+I
Sbjct: 86 NRTQALQLPNACNI 99
>AT5G64080.1 | chr5:25645475-25646638 REVERSE LENGTH=183
Length = 182
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 33 ECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRI 92
+C+ ++ +A CL++V T P CC+GL V+ +CLC K LG +
Sbjct: 42 DCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSAS--LGVTL 99
Query: 93 NVTRAMDLPSGCSIAA 108
N+T+A LP+ C + A
Sbjct: 100 NITKASTLPAACKLHA 115
>AT3G22600.1 | chr3:8006711-8007397 REVERSE LENGTH=171
Length = 170
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 33 ECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRI 92
C + L++++ CL Y+ +T+ P + CC L +VV S CLC ++ LG +
Sbjct: 27 SCTNALISMSPCLNYITGNSTS--PNQQCCNQLSRVVQSSPDCLCQVLNGGGS-QLGINV 83
Query: 93 NVTRAMDLPSGCSI 106
N T+A+ LP C++
Sbjct: 84 NQTQALGLPRACNV 97
>AT2G13820.1 | chr2:5774295-5776279 REVERSE LENGTH=170
Length = 169
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 33 ECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRI 92
+C+ ++ +A CL++V +T P CC+GL VV +CLC K+ LG +
Sbjct: 26 DCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFKNSGS--LGLTL 83
Query: 93 NVTRAMDLPSGCSIAA 108
++++A LPS C +AA
Sbjct: 84 DLSKAASLPSVCKVAA 99
>AT4G14815.1 | chr4:8505122-8505760 FORWARD LENGTH=157
Length = 156
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 33 ECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRI 92
C + L+++A CL+++ + + P++ CC L VV S +CLC ++ D LG +
Sbjct: 25 SCTNVLISMAPCLSFITQNTSL--PSQQCCNQLAHVVRYSSECLCQVL-DGGGSQLGINV 81
Query: 93 NVTRAMDLPSGCSI 106
N T+A+ LP C +
Sbjct: 82 NETQALALPKACHV 95
>AT3G43720.1 | chr3:15615549-15617099 REVERSE LENGTH=194
Length = 193
Score = 49.7 bits (117), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 33 ECADKLMALATCLTYVE--EKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGF 90
+C LM + CL+YV E A P + CC L +V S +CLC L+ LG
Sbjct: 37 DCMANLMNMTGCLSYVTVGEGGGAAKPDKTCCPALAGLVESSPQCLCYLLSGDMAAQLGI 96
Query: 91 RINVTRAMDLPSGCSI 106
+I+ +A+ LP C +
Sbjct: 97 KIDKAKALKLPGVCGV 112
>AT1G36150.1 | chr1:13528257-13529470 FORWARD LENGTH=257
Length = 256
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 33 ECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVAGSKKCLCVLVKDRDEPALGFRI 92
+C+ + ++ CL+++ +T +PT+ CC G+ V+ S KCLC ++ E +GF +
Sbjct: 44 DCSSVIYSMVDCLSFLTVGSTDPSPTKTCCVGVKTVLNYSPKCLCSALESSRE--MGFVL 101
Query: 93 NVTRAMDLPSGCSI 106
+ T+A+ +P C++
Sbjct: 102 DDTKALAMPKICNV 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.135 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,903,564
Number of extensions: 64839
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 15
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)