BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0801900 Os03g0801900|AK106415
(357 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G59710.1 | chr1:21938623-21939673 FORWARD LENGTH=301 218 5e-57
AT3G28630.1 | chr3:10729065-10730564 FORWARD LENGTH=336 209 1e-54
AT1G27100.1 | chr1:9407557-9411074 REVERSE LENGTH=520 196 1e-50
AT3G01311.1 | chr3:103043-104287 REVERSE LENGTH=293 191 6e-49
AT1G69890.1 | chr1:26323426-26324527 REVERSE LENGTH=280 183 1e-46
AT1G69900.1 | chr1:26326520-26327816 REVERSE LENGTH=398 158 5e-39
>AT1G59710.1 | chr1:21938623-21939673 FORWARD LENGTH=301
Length = 300
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 97/153 (63%), Positives = 125/153 (81%), Gaps = 3/153 (1%)
Query: 1 MELFARAQVVRLKSHHDKFLYADEDEVHVTQDRNGAATNARWTVERVPHSPGVVRLRSRY 60
ME+F +A+ VRL+SHHDK+L ADEDE VTQ+RNG+A A+WTVE +P S ++RL+S Y
Sbjct: 1 MEIFQKAKAVRLRSHHDKYLVADEDEESVTQERNGSAGAAKWTVEIIPGSTNLIRLKSAY 60
Query: 61 GRYLSASNEPFLLGMTGRKVLQAPPPGGRATDSSLEWEPVKDGFQAKLKTRYGHYLRANG 120
G+YL+ASN+PFLLG TG+KVLQ P DSSL WEP++D KLKTRYG++LR NG
Sbjct: 61 GKYLTASNKPFLLGATGKKVLQTKP---SRLDSSLAWEPIRDSALVKLKTRYGNFLRGNG 117
Query: 121 GLPPWRNSVTHDVPHRTATQDWVLWDVEIVQVL 153
GLPPWRNSVTHD+PHR+ATQ+WVLW +++V++L
Sbjct: 118 GLPPWRNSVTHDIPHRSATQEWVLWHIDVVEIL 150
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Query: 252 SLSFSAPLHKVEGRAIYYHIAXXXXXXXXXXETRS-FTFNGSNLEELTHKLQEETGLHDI 310
SL+ +P K EGR IYYH+A S FTF G+ +EELT +L+EE+ + D+
Sbjct: 199 SLAVGSP-PKSEGRVIYYHVADDDDDVEDDSVEVSSFTFKGNGVEELTMRLKEESNVEDV 257
Query: 311 IICTRSPITGKLAPLRLQLPPNNAAMHIVLVQESSKVAKTF 351
I+CTRSP+ GKL PLRLQLPPNNA M +VLV +SSK+A+ F
Sbjct: 258 IVCTRSPLNGKLFPLRLQLPPNNADMTVVLVPKSSKIAEKF 298
>AT3G28630.1 | chr3:10729065-10730564 FORWARD LENGTH=336
Length = 335
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 94/151 (62%), Positives = 122/151 (80%), Gaps = 4/151 (2%)
Query: 1 MELFARAQVVRLKSHHDKFLYADEDEVHVTQDRNGAATNARWTVERVPHSPGVVRLRSRY 60
ME+F +A+ VRL+S+HDK+L A+EDE V+QDR+G + NARWTVE V + V+RL+S +
Sbjct: 33 MEIFKKAETVRLRSYHDKYLLAEEDEESVSQDRDGRSMNARWTVEVVEKA-DVIRLKSCF 91
Query: 61 GRYLSASNEPFLLGMTGRKVLQAPPPGGRATDSSLEWEPVKDGFQAKLKTRYGHYLRANG 120
G+YL+ASN P LGMTG++V Q P R DSS EWEPV++G Q +LKTRYG YLRANG
Sbjct: 92 GKYLTASNIPMFLGMTGKRVTQTLP---RRLDSSTEWEPVREGVQVRLKTRYGQYLRANG 148
Query: 121 GLPPWRNSVTHDVPHRTATQDWVLWDVEIVQ 151
GLPPWRNS+THD+PHR+ TQDWVLWD++I++
Sbjct: 149 GLPPWRNSITHDIPHRSTTQDWVLWDIDILE 179
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 247 SRLESSLSFSAPLHKVEGRAIYYHIAXXXXXXXXXXETRSFTFNGSNLEELTHKLQEETG 306
S+ ES + S+P+ K +GR IYY I + F F G LEEL KL EETG
Sbjct: 230 SKSESDDTVSSPV-KADGRLIYYRIGDEDGNVDETAKEELFCFKGMGLEELKEKLIEETG 288
Query: 307 LHDIIICTRSPITGKLAPLRLQLPPNNAAMHIVLVQESSK 346
L DI IC+++P+ GKL PLRL LPPNN MH+VL+ SK
Sbjct: 289 LSDISICSKNPLNGKLYPLRLHLPPNNTKMHVVLIPSPSK 328
>AT1G27100.1 | chr1:9407557-9411074 REVERSE LENGTH=520
Length = 519
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 121/154 (78%), Gaps = 3/154 (1%)
Query: 1 MELFARAQVVRLKSHHDKFLYADEDEVHVTQDRNGAATNARWTVERVPHSPGVVRLRSRY 60
ME F +A+ +R+++ H+K+L AD+DE VTQ+RNG+ NARWTVE V S V+RL+S Y
Sbjct: 227 MEFFQKAKAIRMRNSHNKYLTADDDEETVTQNRNGSTKNARWTVEPVRDSFHVIRLKSCY 286
Query: 61 GRYLSASNEPFLLGMTGRKVLQAPPPGGRATDSSLEWEPVKDGFQAKLKTRYGHYLRANG 120
G+YL+ASNE FLLG TG+KV+Q DSS+EWEP+++G + KL+TR G+YLR NG
Sbjct: 287 GKYLTASNERFLLGATGKKVIQLKLS---RVDSSVEWEPLREGSKIKLRTRSGNYLRGNG 343
Query: 121 GLPPWRNSVTHDVPHRTATQDWVLWDVEIVQVLT 154
GLPPWRNSVTHDVPH +ATQD + WDV++V++LT
Sbjct: 344 GLPPWRNSVTHDVPHLSATQDSISWDVDVVEILT 377
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/147 (53%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Query: 1 MELFARAQVVRLKSHHDKFLYADEDEVHVTQDRNGAATNARWTVERVPHSPGVVRLRSRY 60
MELF + V+L+SH DKFL AD+D+ + Q R G A A WTVE V P ++RL+S +
Sbjct: 1 MELFTKGNNVKLRSHLDKFLVADDDQETIRQSRKGDARRAVWTVEPVVDKPNLIRLKSSH 60
Query: 61 GRYLSASNEPFLLGMTGRKVLQAPPPGGRATDSSLEWEPVKDGFQAKLKTRYGHYLRANG 120
G YL+ASN+P LLGMTG KV Q + D +WEP +DGFQ KLK+ G ++RANG
Sbjct: 61 GTYLTASNKPLLLGMTGEKVTQT-ASFNKLMDWQTQWEPERDGFQVKLKSWCGKWMRANG 119
Query: 121 GLPPWRNSVTHDVPHRTATQDWVLWDV 147
G PPWRNSVTHD PH + T++W++WDV
Sbjct: 120 GTPPWRNSVTHDEPHTSKTKNWLIWDV 146
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 261 KVEGRAIYYHIAXXXXXXXXXXET-RSFTFNGSNLEELTHKLQEETGLHDIIICTRSPIT 319
K +GR IYYH+A +FTF G+++ ELT L+EET + D ++CTRSP+
Sbjct: 432 KSDGRTIYYHVADEEGHVEDETTVGYAFTFKGNSVAELTQTLREETCMEDAVVCTRSPLN 491
Query: 320 GKLAPLRLQLPPNNAAMHIVLVQESSKV 347
GKL PLRLQLPPNN +H++L+ S+ +
Sbjct: 492 GKLFPLRLQLPPNNGTLHVILLPSSASL 519
>AT3G01311.1 | chr3:103043-104287 REVERSE LENGTH=293
Length = 292
Score = 191 bits (485), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 90/153 (58%), Positives = 113/153 (73%), Gaps = 5/153 (3%)
Query: 1 MELFARAQVVRLKSHHDKFLYADEDEVHVTQDRNGAATNARWTVERVPHSPGVVRLRSRY 60
ME+F +A +VRL+SH+DK+L ADED+ V QDR G N RWTVE VP S V+RL+S Y
Sbjct: 1 MEIFRKATIVRLRSHNDKYLSADEDQESVHQDRRGTTKNTRWTVEIVPGS-NVIRLQSCY 59
Query: 61 GRYLSASNEPFLLGMTGRKVLQAPPPGGRATDSSLEWEPVKD-GFQAKLKTRYGHYLRAN 119
G+YL+A+N FLLG TG KVLQ P DSS EWEP+ D G + K+RYG YLRAN
Sbjct: 60 GKYLTATNIHFLLGATGEKVLQTLP---EKLDSSAEWEPLSDDGVHVRFKSRYGQYLRAN 116
Query: 120 GGLPPWRNSVTHDVPHRTATQDWVLWDVEIVQV 152
G+PPWRNS+THD+P RT TQDWV+W V+++Q+
Sbjct: 117 KGVPPWRNSITHDIPSRTVTQDWVMWTVDVLQI 149
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 247 SRLESSLSF--SAPLHKVEGRAIYYHIAXXXXXXXXXXETRSFTFNGSNLEELTHKLQEE 304
SR+ES SF S PL K EGR IYY +S F+GS L EL KL+EE
Sbjct: 166 SRIESDDSFIVSLPL-KSEGRLIYYETGDDSGNINKEIGEKSLIFHGSELIELKKKLEEE 224
Query: 305 TGLHDIIICTRSPITGKLAPLRLQLPPNNAAMHIVLVQESS 345
T + D++I R+P+ KL PL+L LPPNNA MHI++ S
Sbjct: 225 TEMEDVMIWCRNPLNEKLCPLQLHLPPNNATMHIIVFPSSC 265
>AT1G69890.1 | chr1:26323426-26324527 REVERSE LENGTH=280
Length = 279
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/154 (59%), Positives = 113/154 (73%), Gaps = 6/154 (3%)
Query: 1 MELFARAQVVRLKSHHDKFLYADEDEVHVTQDRNGAATNARWTVERVPHSPGVVRLRSRY 60
M+ F +A+ VR+++ HDK+L ADEDE VTQDRNG+ ARW VE V S V+RLRS Y
Sbjct: 1 MDFFNQAKAVRMRNVHDKYLTADEDEETVTQDRNGSDKRARWIVEPVRGSFEVIRLRSCY 60
Query: 61 GRYLSASNEPFLLGMTGRKVLQAPPPGGRATDSSLEWEPVKDGFQAKLKTRYGHYLRANG 120
G YL+ASNE FLLG TGRKV+ + P DSS+EWEPV++G + KLKTRYG+ LRANG
Sbjct: 61 GNYLTASNERFLLGATGRKVVLSKPA---RLDSSVEWEPVREGSKMKLKTRYGNLLRANG 117
Query: 121 GLPPWRNSVTHDVPHRTATQDWVLWDVEIVQVLT 154
GLPPWRNSVTHD H D LWDV++V++L
Sbjct: 118 GLPPWRNSVTHDTSH---VLDSFLWDVDVVEILV 148
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 250 ESSLSFSAPLHKVEGRAIYYHIAXXXXXXXXXXET-RSFTFNGSNLEELTHKLQEETGLH 308
+S + P K EGR IYYHIA + TF G+++E+LT LQEET +
Sbjct: 183 KSEEELTVPPPKSEGRPIYYHIADEEGHVEEESAVGYALTFKGNSVEQLTQALQEETSMD 242
Query: 309 DIIICTRSPITGKLAPLRLQLPPNNAAMHIVLVQESS 345
D+++CTR P GKL PLRLQLPPN+ MH++LV S+
Sbjct: 243 DVVVCTRHPSNGKLFPLRLQLPPNSGTMHVILVPSST 279
>AT1G69900.1 | chr1:26326520-26327816 REVERSE LENGTH=398
Length = 397
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 99/152 (65%), Gaps = 3/152 (1%)
Query: 1 MELFARAQVVRLKSHHDKFLYADEDEVHVTQDRNGAATNARWTVERVPHSPGVVRLRSRY 60
MELF VRL+S HD ++YA EDE V Q +G + + WTVE VP P +RL+S Y
Sbjct: 1 MELFNNGTAVRLRSCHDTYIYAVEDEKTVRQSSDGTSRQSLWTVEMVPRKPKFIRLKSCY 60
Query: 61 GRYLSASNEPFLLGMTGRKVLQAPPPGGRATDSSLEWEPVKDGFQAKLKTRYGHYLRANG 120
G+YL+AS FLLGMTG KV+Q PP R + +WEP+K+ KL + YLR NG
Sbjct: 61 GKYLTASESSFLLGMTGAKVIQTPPF--RQAEHESDWEPIKEESTVKLMSWNEKYLRGNG 118
Query: 121 GLPPWRNSVTHD-VPHRTATQDWVLWDVEIVQ 151
G PPWRNSVT D PH +AT+ W+LW VE+V+
Sbjct: 119 GAPPWRNSVTCDREPHISATKKWILWSVEVVE 150
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 106/143 (74%), Gaps = 5/143 (3%)
Query: 1 MELFARAQVVRLKS--HHDKFLYADEDEVHVTQDRNGAATNARWTVERVPHSPGVVRLRS 58
ME+F A+ VRL+S HH K+L AD+DE V +NG++ ARW VE VP S +RL+S
Sbjct: 241 MEIFRDAKSVRLRSYAHHGKYLIADDDEEGVIMGKNGSSKEARWRVEMVPGSEKAIRLKS 300
Query: 59 RYGRYLSASNEPFLLGMTGRKVLQAPPPGGRATDSSLEWEPVKDGFQAKLKTRY-GHYLR 117
+G YL+ASNE FLLG TG KV+Q+ RA + + EWEPVK+G + KL++R G+YLR
Sbjct: 301 CHGGYLTASNERFLLGATGHKVVQSRKI--RADEPAGEWEPVKEGSRVKLRSRNGGNYLR 358
Query: 118 ANGGLPPWRNSVTHDVPHRTATQ 140
ANGG+PPWRNSVTHD+P+R+ATQ
Sbjct: 359 ANGGVPPWRNSVTHDLPNRSATQ 381
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,906,644
Number of extensions: 259682
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 13
Length of query: 357
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,364,969
Effective search space: 2149797033
Effective search space used: 2149797033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)