BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0798000 Os03g0798000|Os03g0798000
         (112 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G43600.1  | chr3:15512778-15517375 REVERSE LENGTH=1322          61   1e-10
AT2G27150.1  | chr2:11601952-11607014 FORWARD LENGTH=1333          57   1e-09
AT1G04580.1  | chr1:1252212-1257510 REVERSE LENGTH=1338            57   2e-09
AT5G20960.1  | chr5:7116783-7122338 FORWARD LENGTH=1369            54   1e-08

>AT3G43600.1 | chr3:15512778-15517375 REVERSE LENGTH=1322
          Length = 1321

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 10/60 (16%)

Query: 1    MNDGSIA---GGFEIGQGLWTKVKQMTAFALGQL-CDD----LDKVHVILIQADTLSMIH 52
            ++DG+I    GG E+GQGLWTKVKQMT++ALG L CD     L+K+ V  IQ+D+LSM+ 
Sbjct: 1013 LSDGTIVVEIGGIELGQGLWTKVKQMTSYALGMLQCDGTEELLEKIRV--IQSDSLSMVQ 1070



>AT2G27150.1 | chr2:11601952-11607014 FORWARD LENGTH=1333
          Length = 1332

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 10/62 (16%)

Query: 1    MNDGSIA---GGFEIGQGLWTKVKQMTAFALGQL-CDD----LDKVHVILIQADTLSMIH 52
            ++DGS+    GG EIGQGLWTKV+QM A+ LG + C+     LD++ V  +Q+DTL MI 
Sbjct: 1024 LSDGSVVVEVGGIEIGQGLWTKVQQMVAYGLGMVKCEGNEKLLDRIRV--VQSDTLGMIQ 1081

Query: 53   QG 54
             G
Sbjct: 1082 GG 1083



>AT1G04580.1 | chr1:1252212-1257510 REVERSE LENGTH=1338
          Length = 1337

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 6/56 (10%)

Query: 1    MNDGSIA---GGFEIGQGLWTKVKQMTAFALGQL-CDDLDKV--HVILIQADTLSM 50
            +NDGS+A    G E+GQGLWTKV+QM A+ LG + C+  D +   + L+Q DTLSM
Sbjct: 1026 LNDGSVAVEVAGIEVGQGLWTKVQQMVAYGLGMIKCEGSDDLLERIRLLQTDTLSM 1081



>AT5G20960.1 | chr5:7116783-7122338 FORWARD LENGTH=1369
          Length = 1368

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 9/60 (15%)

Query: 1    MNDGSIA---GGFEIGQGLWTKVKQMTAFALGQL-----CDDLDKVHVILIQADTLSMIH 52
            + DGSI     G EIGQGLWTKVKQM A++LG +      D+L K  + +IQ+DTLSM+ 
Sbjct: 1056 LGDGSIVVEVQGIEIGQGLWTKVKQMAAYSLGLIQCGTTSDELLK-KIRVIQSDTLSMVQ 1114



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,714,004
Number of extensions: 104151
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 4
Length of query: 112
Length of database: 11,106,569
Length adjustment: 81
Effective length of query: 31
Effective length of database: 8,885,873
Effective search space: 275462063
Effective search space used: 275462063
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)