BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0796900 Os03g0796900|AK068589
(425 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G28770.2 | chr5:10796648-10798147 REVERSE LENGTH=315 127 1e-29
AT4G02640.2 | chr4:1154031-1156085 FORWARD LENGTH=418 114 1e-25
AT3G54620.1 | chr3:20218085-20220341 REVERSE LENGTH=404 110 1e-24
AT5G24800.1 | chr5:8515259-8516541 FORWARD LENGTH=278 73 3e-13
>AT5G28770.2 | chr5:10796648-10798147 REVERSE LENGTH=315
Length = 314
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 155/365 (42%), Gaps = 81/365 (22%)
Query: 52 AMNRCPSEWYFQKFLEEAVLDSPVPNPSPRXXXXXXXXXXXXXXXDVKQPQLXXXXXXXX 111
++NR SEW F +F++E+ D +
Sbjct: 23 SLNRSASEWAFNRFIQES-----------------------SAAADDGESTTACGVSVSS 59
Query: 112 XXXXVVDPVEYNAMLKQKLEKDLAAVAMWRASGTVPPERPGAGSSLLNADVSHIGAPNSI 171
VD EY A LK KL AAVAM R + P + G N + +
Sbjct: 60 PPNVPVDSEEYRAFLKSKLNLACAAVAMKRGTFIKPQDTSGRSD---NGGANESEQASLA 116
Query: 172 GGNATPVQNMLXXXXXXXXXQLVQNVDVLVKQPTXXXXXXXXXXXXMEGEAETTGTARPA 231
ATP + +L + E EA+ P
Sbjct: 117 SSKATP----MMSSAITSGSELSGD----------------------EEEADGETNMNPT 150
Query: 232 DQRLQRRKQSNXXXXXXXXXXXXXHLNELEAQVSQLRVENSSLLRRLADVNQKYNDAAVD 291
+ + +R SN HL+ELE QVSQLRVENS L++ L DV Q +NDA+V+
Sbjct: 151 NVKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQTFNDASVE 210
Query: 292 NRVLKADVETLRAKVKMAEDSVKRVTGMNALFPAAXXXXXXXXXXXXXXXEATSDAAVPI 351
NRVLKA++ETLRAKVKMAE++VKR+TG N +F + S ++P
Sbjct: 211 NRVLKANIETLRAKVKMAEETVKRLTGFNPMF--------------HNMPQIVSTVSLPS 256
Query: 352 QDDPNNYFATNN--DIGGNNNYMPDIPSSAQEDEDFVNGALAAGKIGRTASLQRVASLEH 409
+ T+N D + P+I SS + + AL K+ RTAS++RV SLEH
Sbjct: 257 E--------TSNSPDTTSSQVTTPEIISSGNKGK-----ALIGCKMNRTASMRRVESLEH 303
Query: 410 LQKRM 414
LQKR+
Sbjct: 304 LQKRI 308
>AT4G02640.2 | chr4:1154031-1156085 FORWARD LENGTH=418
Length = 417
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 147/338 (43%), Gaps = 41/338 (12%)
Query: 1 MERVFSVEEISDPFWVPPPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAMNRCPSEW 60
M +FS+++ SDPFW PP P + +++ EW
Sbjct: 1 MNSIFSIDDFSDPFWETPPIPLNPDSSKPVTA------------------DEVSQSQPEW 42
Query: 61 YFQKFLEE----AVLDSPVPN-----------PSPRXXXXXXXXXXXXXXXDVKQPQLXX 105
F+ FLEE AV P+ N S D L
Sbjct: 43 TFEMFLEEISSSAVSSEPLGNNNNAIVGVSSAQSLPSVSGQNDFEDDSRFRDRDSGNLDC 102
Query: 106 XXXXXXXXXXVVDPVEYNAMLKQKLEKDLAAVAMWRASGTVPPERPGAGSSLLNADVSHI 165
+VD +Y +LK KLE + A V R G+V PE + V
Sbjct: 103 AAPMTTKTV-IVDSDDYRRVLKNKLETECATVVSLRV-GSVKPEDSTSSPETQLQPVQ-- 158
Query: 166 GAPNSIGGNATPVQNMLXXXXXXXXXQLVQNVDVLVKQPTXXXXXXXXXXXXMEGEAETT 225
+P + G TP + + V+ V +KQ T ++ E ETT
Sbjct: 159 SSPLTQGSLMTPGELGVTSSLPAE----VKKTGVSMKQVTSGSSREYSDDEDLDEENETT 214
Query: 226 GTARPADQRLQRRKQSNXXXXXXXXXXXXXHLNELEAQVSQLRVENSSLLRRLADVNQKY 285
G+ +P D + RR SN ++LE QV+ L+ E+SSLL++L+++N KY
Sbjct: 215 GSLKPEDVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKY 274
Query: 286 NDAAVDNRVLKADVETLRAKVKMAEDSVKRVTGMNALF 323
++AAV NR+LKAD+ETLRAKVKMAE++VKRVTGMN +
Sbjct: 275 DEAAVGNRILKADIETLRAKVKMAEETVKRVTGMNPML 312
>AT3G54620.1 | chr3:20218085-20220341 REVERSE LENGTH=404
Length = 403
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 116 VVDPVEYNAMLKQKLEKDLAAVAMWRASGTVPPERPGAGSSLLNADVSHIGAPNSIGGNA 175
VVDP +Y+A+LK KLE AAVA R GTV PE A +S I A S G ++
Sbjct: 128 VVDPNQYHAILKSKLELACAAVA--RRVGTVKPEDSSASASNQKQAQGSIVAQTSPGASS 185
Query: 176 TPVQNMLXXXXXXXXXQLVQNVDVLVKQPTXXXXXXXXXXXXMEGEAETTGTARPADQRL 235
+ DV P + P D +
Sbjct: 186 V---------RFSPTTSTQKKPDV----PARQTSISSRDDSDDDDLDGDADNGDPTDVKR 232
Query: 236 QRRKQSNXXXXXXXXXXXXXHLNELEAQVSQLRVENSSLLRRLADVNQKYNDAAVDNRVL 295
RR SN +NE + QV QLR E+S+L+ RL+D+N KY+ AAVDNR+L
Sbjct: 233 ARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLINRLSDMNHKYDAAAVDNRIL 292
Query: 296 KADVETLRAKVKMAEDSVKRVTGMNALF 323
+AD+ETLR KVKMAE++VKRVTG+N L
Sbjct: 293 RADIETLRTKVKMAEETVKRVTGVNPLH 320
>AT5G24800.1 | chr5:8515259-8516541 FORWARD LENGTH=278
Length = 277
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 220 GEAETTGTARPADQRLQRRKQSNXXXXXXXXXXXXXHLNELEAQVSQLRVENSSLLRRLA 279
G++E T P D + RR SN +L +LE QV L+ +NS+L ++L
Sbjct: 110 GQSEMTND--PNDLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLI 167
Query: 280 DVNQKYNDAAVDNRVLKADVETLRAKVKMAEDSVKR---VTGMNALF 323
D Q++ A +NRVLK+DVETLR KVK+AED V R + +N L
Sbjct: 168 DATQQFRSAGTNNRVLKSDVETLRVKVKLAEDLVARGSLTSSLNQLL 214
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,938,199
Number of extensions: 222270
Number of successful extensions: 547
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 5
Length of query: 425
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 324
Effective length of database: 8,337,553
Effective search space: 2701367172
Effective search space used: 2701367172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)