BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0796400 Os03g0796400|AK109800
(298 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20030.1 | chr5:6764971-6766036 REVERSE LENGTH=327 81 5e-16
AT4G32440.2 | chr4:15657295-15659354 FORWARD LENGTH=394 60 2e-09
AT2G44440.1 | chr2:18336621-18338950 REVERSE LENGTH=430 52 6e-07
AT5G13020.1 | chr5:4129691-4132089 REVERSE LENGTH=398 49 3e-06
AT3G12140.3 | chr3:3869121-3870964 REVERSE LENGTH=384 48 5e-06
>AT5G20030.1 | chr5:6764971-6766036 REVERSE LENGTH=327
Length = 326
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 113/263 (42%), Gaps = 24/263 (9%)
Query: 40 QPAVVQTRCRWIIGDVTEVLDRNTWKLGKIAKMLKNNYFVIRLADCIQLKEFHISSLRVP 99
+P +Q W GD+ EV +WK+ ++K+L N F++RL + S +RV
Sbjct: 56 EPPRLQVLDAWCPGDILEVFQSCSWKMAIVSKVLGNGCFLVRLLGSSLKFKVTKSDIRVR 115
Query: 100 ASPHSNNQYSVAD-------KKSEAKLAQRGQIPSDALPGRT-NKKRKSTADTSFNPRRR 151
S N + + S +L ++ D + + +K +S S ++R
Sbjct: 116 QSWQDNEWIMIGQGTSRLSAQTSTGELRRKVNPKGDYISSESKDKLDESDVPLSVGLKKR 175
Query: 152 TS---RPENASRACVL---DGSTTQNRFQFIREEAECSVASCSINDPDTTFTNAKKLQSL 205
T P N +RA + RE SV SC ++ + + +++
Sbjct: 176 TYSLVEPHNQTRALAAYPPRFREEVKEEEEDRESVASSVGSCCMDTDGLSAVSFNPIETG 235
Query: 206 GFPDDAMSACPCTSGMXXXXXXXXXXXXXXXXXXXXIAVHELELEAYQSTMRALYASGPL 265
D S+C VH LEL+AY+S++ L+ASGP+
Sbjct: 236 NSSDTESSSC---------GYGKVKKLVVPRKGSEAADVHRLELDAYRSSIERLHASGPI 286
Query: 266 -TWEQESLLTNLRLSLNISNEEH 287
TWEQE+ +TNLRL LNISNEEH
Sbjct: 287 ITWEQETWITNLRLKLNISNEEH 309
>AT4G32440.2 | chr4:15657295-15659354 FORWARD LENGTH=394
Length = 393
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 36/40 (90%)
Query: 248 ELEAYQSTMRALYASGPLTWEQESLLTNLRLSLNISNEEH 287
EL +Y+ST+ L++SGPL+WEQE+ LT+LRLSLNIS++EH
Sbjct: 321 ELYSYRSTLGELFSSGPLSWEQEASLTDLRLSLNISDDEH 360
>AT2G44440.1 | chr2:18336621-18338950 REVERSE LENGTH=430
Length = 429
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 244 VHELELEAYQSTMRALYASG-PLTWEQESLLTNLRLSLNISNEEH 287
+H++E EAY S +RA A G ++WE+ES++T LR L++SNEEH
Sbjct: 61 IHQIEKEAYISVLRAFKAQGDAISWEKESVITELRKELSLSNEEH 105
>AT5G13020.1 | chr5:4129691-4132089 REVERSE LENGTH=398
Length = 397
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 244 VHELELEAYQSTMRALYA-SGPLTWEQESLLTNLRLSLNISNEEH 287
+H +E EAY S +RA A S +TWE+ESL+T LR L +S+EEH
Sbjct: 54 IHLIEQEAYSSILRAFKAQSDAITWEKESLITELRKELRVSDEEH 98
>AT3G12140.3 | chr3:3869121-3870964 REVERSE LENGTH=384
Length = 383
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 244 VHELELEAYQSTMRALYA-SGPLTWEQESLLTNLRLSLNISNEEH 287
+H+LE EAY + +RA A S ++WE+ESL+T LR L +S++EH
Sbjct: 5 IHQLEQEAYTAVLRAFKAQSDAISWEKESLITELRKELRVSDDEH 49
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,552,125
Number of extensions: 204015
Number of successful extensions: 530
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 5
Length of query: 298
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,419,801
Effective search space: 1683960200
Effective search space used: 1683960200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)