BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0795500 Os03g0795500|AK101877
         (191 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04780.1  | chr3:1311447-1313013 REVERSE LENGTH=177            248   1e-66
AT2G25950.1  | chr2:11068735-11070524 FORWARD LENGTH=205           52   1e-07

>AT3G04780.1 | chr3:1311447-1313013 REVERSE LENGTH=177
          Length = 176

 Score =  248 bits (633), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/169 (70%), Positives = 139/169 (82%), Gaps = 1/169 (0%)

Query: 23  VPRGQVDLVDFIDWSGVECLNQDPAHSIVNALKQGYRDDEGLYLASDSDEQLLIHIPFMQ 82
           +P+GQVDL+DFIDWSGVECLNQ  +HS+ NALKQGYR+DEGL L SD+DEQLLI+IPF Q
Sbjct: 9   IPKGQVDLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLNLESDADEQLLIYIPFNQ 68

Query: 83  VVKLHSALFKGPEEDGPKTIKLFCNKEHMGFSNVNDYPPXXXXXXXXXXXXXXKPMQLKY 142
           V+KLHS   KGPEE+GPKT+K F NKEHM FSNVND+PP              KP+ LKY
Sbjct: 69  VIKLHSFAIKGPEEEGPKTVKFFSNKEHMCFSNVNDFPP-SDTAELTEENLKGKPVVLKY 127

Query: 143 VKFQNVRSLTIFIEDNQSGSDVSKILKIALYGTTVDTTNMKDLKKIEEH 191
           VKFQNVRSLTIFIE NQSGS+V+K+ KIALYG+TV+TT+MK LKKIE+H
Sbjct: 128 VKFQNVRSLTIFIEANQSGSEVTKVQKIALYGSTVETTDMKGLKKIEDH 176



>AT2G25950.1 | chr2:11068735-11070524 FORWARD LENGTH=205
          Length = 204

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 6/149 (4%)

Query: 30  LVDFIDWSGVECLNQD---PAHSIVNALKQGYRDDEGLYLASDSDEQLLIHIPFMQVVKL 86
           L   ID S V  LN+     A S+  A +Q          +++ D +LL+ +PF   VK+
Sbjct: 20  LYKHIDLSKVSALNESVSGSAKSVFKAWEQRLHSSGEHLESNEGDPELLVFVPFTSDVKI 79

Query: 87  HS-ALFKGPEEDGPKTIKLFCNKEHMGFSNVNDYPPXXXXXXXXXXXXXXKPMQLKYVKF 145
            S ++  GPE   P  +++F N+E + FS+                    +  Q +Y KF
Sbjct: 80  KSISIVGGPEGTSPSKLRVFINREGIDFSDAESMQAVQEWELAENLQGVLE-YQTRYSKF 138

Query: 146 QNVRSLTIFIEDNQSGSDVSKILKIALYG 174
           Q+V ++T+   ++  G D ++I  I   G
Sbjct: 139 QSVGNITLHFPES-FGGDTTQIRYIGFKG 166



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,482,664
Number of extensions: 129770
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 98
Effective length of database: 8,556,881
Effective search space: 838574338
Effective search space used: 838574338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)