BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0794300 Os03g0794300|Os03g0794300
         (177 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32030.1  | chr2:13632675-13633241 REVERSE LENGTH=189          167   3e-42
AT2G32020.1  | chr2:13631193-13631744 REVERSE LENGTH=184          156   6e-39
AT3G22560.1  | chr3:7998915-7999442 REVERSE LENGTH=176            118   1e-27

>AT2G32030.1 | chr2:13632675-13633241 REVERSE LENGTH=189
          Length = 188

 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 106/174 (60%), Gaps = 10/174 (5%)

Query: 2   EVTLRRFELSDVDAMMAWASDPAVAAFCRWEPYQSTEPLLAYLRDTVLPHPWFRAICLAT 61
           ++ LR   LSDVD  M WA+D  V  FC WEPY S E  +AYL D +LPHPW RAICL  
Sbjct: 24  KIHLRPMTLSDVDDFMVWATDSNVTRFCTWEPYTSREAAIAYLNDALLPHPWLRAICLDN 83

Query: 62  XXXXXXXXXRPVGAVSLAPTADACRGELGYVVARAHWGKGXXXXXXXXXXXXXLGGEVSG 121
                    RP+G++S+ P  D  RGE+GYV+   +WGKG                E   
Sbjct: 84  --------DRPIGSISVTP-VDEIRGEIGYVLGSKYWGKGIATEAVRLVAGEIF-KEKPE 133

Query: 122 LARVEALVDVDNRASQRVVEKAGFRREGVLRRHYWHKGRVRDLVMYSFVSSDQL 175
           + R+EALVDVDN  SQ+V+EK GF +EGV+R+  + KG VRD+VM+SF+ SD L
Sbjct: 134 MQRLEALVDVDNVGSQKVLEKVGFVKEGVMRKFMYLKGNVRDMVMFSFLPSDSL 187



>AT2G32020.1 | chr2:13631193-13631744 REVERSE LENGTH=184
          Length = 183

 Score =  156 bits (394), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 102/173 (58%), Gaps = 10/173 (5%)

Query: 3   VTLRRFELSDVDAMMAWASDPAVAAFCRWEPYQSTEPLLAYLRDTVLPHPWFRAICLATX 62
           ++LR   LSDVD  M WA+DP VA FC WEP  S +  + Y+ D VL HPW RAICL   
Sbjct: 20  ISLRPMTLSDVDDYMVWATDPKVARFCTWEPCTSRDEAIKYITDRVLTHPWLRAICLED- 78

Query: 63  XXXXXXXXRPVGAVSLAPTADACRGELGYVVARAHWGKGXXXXXXXXXXXXXLGGEVSGL 122
                   RP+G + L    D  R E+GYV+AR +WGKG                E   +
Sbjct: 79  -------DRPIGYI-LIMAVDNIRKEIGYVLARKYWGKGFATEAVRLVTAEVF-EEFPEI 129

Query: 123 ARVEALVDVDNRASQRVVEKAGFRREGVLRRHYWHKGRVRDLVMYSFVSSDQL 175
            R+EALVDVDN  SQRV+EK GF REGV+R+    KG VRD VM+SF+S+D L
Sbjct: 130 ERLEALVDVDNVGSQRVLEKVGFTREGVMRKFICIKGSVRDTVMFSFLSTDTL 182



>AT3G22560.1 | chr3:7998915-7999442 REVERSE LENGTH=176
          Length = 175

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 96/173 (55%), Gaps = 10/173 (5%)

Query: 3   VTLRRFELSDVDAMMAWASDPAVAAFCRWEPYQSTEPLLAYLRDTVLPHPWFRAICLATX 62
           + LR F LSD + +  WA D  V  + RW+   S E    ++ +  +PHPW R+I L   
Sbjct: 8   IFLRPFNLSDAEDVFKWAGDDDVTRYLRWDSVNSLEEAKQHILNKAIPHPWRRSISLLQD 67

Query: 63  XXXXXXXXRPVGAVSLAPTADA--CRGELGYVVARAHWGKGXXXXXXXXXXXXXLGGEVS 120
                     +G VS+ P +    CR +L Y VA+  WG+G             L  +  
Sbjct: 68  G-------HSIGYVSVKPDSGDGRCRADLAYAVAKEFWGRGIATAAVRMAVEQALE-DFP 119

Query: 121 GLARVEALVDVDNRASQRVVEKAGFRREGVLRRHYWHKGRVRDLVMYSFVSSD 173
            + R++A+V+V+N+ASQRV+EKAGFR+EG+L ++ + KG +RD+ +YS+V  D
Sbjct: 120 EVVRLQAVVEVENKASQRVLEKAGFRKEGLLEKYGFSKGVIRDMFLYSYVKDD 172



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,086,071
Number of extensions: 95252
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 3
Length of query: 177
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 85
Effective length of database: 8,584,297
Effective search space: 729665245
Effective search space used: 729665245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)