BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0793800 Os03g0793800|AK058812
(177 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G22600.1 | chr3:8006711-8007397 REVERSE LENGTH=171 93 6e-20
AT2G48130.1 | chr2:19685263-19685977 REVERSE LENGTH=184 80 5e-16
AT4G14815.1 | chr4:8505122-8505760 FORWARD LENGTH=157 76 1e-14
AT1G03103.1 | chr1:747219-747955 FORWARD LENGTH=172 75 3e-14
AT3G43720.1 | chr3:15615549-15617099 REVERSE LENGTH=194 65 1e-11
AT2G13820.1 | chr2:5774295-5776279 REVERSE LENGTH=170 61 3e-10
AT4G08670.1 | chr4:5536765-5538210 REVERSE LENGTH=209 54 3e-08
AT5G09370.1 | chr5:2909450-2910475 REVERSE LENGTH=159 54 4e-08
AT1G36150.1 | chr1:13528257-13529470 FORWARD LENGTH=257 53 9e-08
AT5G64080.1 | chr5:25645475-25646638 REVERSE LENGTH=183 52 2e-07
AT2G27130.1 | chr2:11595379-11596395 FORWARD LENGTH=177 49 1e-06
AT1G55260.1 | chr1:20614663-20616158 FORWARD LENGTH=228 48 2e-06
>AT3G22600.1 | chr3:8006711-8007397 REVERSE LENGTH=171
Length = 170
Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 29 QTGCTAALINLYPCLNYISGNETSPTRTCCSQLATVVQSQPQCLCAAXXXXXXXXXXXVT 88
Q+ CT ALI++ PCLNYI+GN TSP + CC+QL+ VVQS P CLC +
Sbjct: 25 QSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVVQSSPDCLCQV--LNGGGSQLGIN 82
Query: 89 IDKTRALELPKACNVVTPPASRCN 112
+++T+AL LP+ACNV TPP SRCN
Sbjct: 83 VNQTQALGLPRACNVQTPPVSRCN 106
>AT2G48130.1 | chr2:19685263-19685977 REVERSE LENGTH=184
Length = 183
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 30 TGCTAALINLYPCLNYISGNETSPTRTCCSQLATVVQSQPQCLCAAXXXXXXXXXXXVTI 89
+ C + L L PCL+YI+GN T+P++ CCS+L +V++S PQC+C+A + I
Sbjct: 28 SSCVSTLTTLSPCLSYITGNSTTPSQPCCSRLDSVIKSSPQCICSA--VNSPIPNIGLNI 85
Query: 90 DKTRALELPKACNVVTPPASRCN 112
++T+AL+LP ACN+ TPP ++CN
Sbjct: 86 NRTQALQLPNACNIQTPPLTQCN 108
>AT4G14815.1 | chr4:8505122-8505760 FORWARD LENGTH=157
Length = 156
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 29 QTGCTAALINLYPCLNYISGNETSPTRTCCSQLATVVQSQPQCLCAAXXXXXXXXXXXVT 88
Q+ CT LI++ PCL++I+ N + P++ CC+QLA VV+ +CLC +
Sbjct: 23 QSSCTNVLISMAPCLSFITQNTSLPSQQCCNQLAHVVRYSSECLCQV--LDGGGSQLGIN 80
Query: 89 IDKTRALELPKACNVVTPPASRCN 112
+++T+AL LPKAC+V TPPASRC+
Sbjct: 81 VNETQALALPKACHVETPPASRCH 104
>AT1G03103.1 | chr1:747219-747955 FORWARD LENGTH=172
Length = 171
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 29 QTGCTAALINLYPCLNYISGNETSPTRTCCSQLATVVQSQPQCLCAAXXXXXXXXXXXVT 88
Q GC L +L PCL Y++G +SP+ +CC Q +TVVQS P+CLC+
Sbjct: 22 QAGCRDTLTSLSPCLYYLNGGSSSPSWSCCRQFSTVVQSSPECLCSV-VNSNESSFYGFK 80
Query: 89 IDKTRALELPKACNVVTPPASRCN 112
++T AL LP ACNV TP S CN
Sbjct: 81 FNRTLALNLPTACNVQTPSPSLCN 104
>AT3G43720.1 | chr3:15615549-15617099 REVERSE LENGTH=194
Length = 193
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 32 CTAALINLYPCLNYIS----GNETSPTRTCCSQLATVVQSQPQCLCAAXXXXXXXXXXXV 87
C A L+N+ CL+Y++ G P +TCC LA +V+S PQCLC +
Sbjct: 38 CMANLMNMTGCLSYVTVGEGGGAAKPDKTCCPALAGLVESSPQCLC-YLLSGDMAAQLGI 96
Query: 88 TIDKTRALELPKACNVVTPPASRCN 112
IDK +AL+LP C V+TP S C+
Sbjct: 97 KIDKAKALKLPGVCGVITPDPSLCS 121
>AT2G13820.1 | chr2:5774295-5776279 REVERSE LENGTH=170
Length = 169
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 32 CTAALINLYPCLNYISGNET--SPTRTCCSQLATVVQSQPQCLCAAXXXXXXXXXXXVTI 89
C++ ++N+ CL++++ T P TCCS L TVV++ P+CLC A +T+
Sbjct: 27 CSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEA---FKNSGSLGLTL 83
Query: 90 DKTRALELPKACNVVTPPASRCN 112
D ++A LP C V PP++RC
Sbjct: 84 DLSKAASLPSVCKVAAPPSARCG 106
>AT4G08670.1 | chr4:5536765-5538210 REVERSE LENGTH=209
Length = 208
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 29 QTGCTAALINLYPCLNY--ISGNETSPTRTCCSQLATVVQSQPQCLCAAXXXXXXXXXXX 86
+ C+ + ++ CL Y + NET P ++CC+ + TV+Q PQC+CA
Sbjct: 45 SSDCSTVIYSMMDCLGYLGVGSNETKPEKSCCTGIETVLQYNPQCICAG---LVSAGEMG 101
Query: 87 VTIDKTRALELPKACNV-VTPP 107
+ ++ TRAL PKAC + + PP
Sbjct: 102 IELNSTRALATPKACKLSIAPP 123
>AT5G09370.1 | chr5:2909450-2910475 REVERSE LENGTH=159
Length = 158
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 30 TGCTAALINLYPCLNYIS--GNETSPTRTCCSQLATVVQSQPQCLCAAXXXXXXXXXXXV 87
+ C +I L+PCL +IS G +PT +CCS L ++ ++P CLC +
Sbjct: 26 SDCDTLVITLFPCLPFISIGGTADTPTASCCSSLKNILDTKPICLCEG----LKKAPLGI 81
Query: 88 TIDKTRALELPKACNVVTPPASRCN 112
++ T++ LP AC + PP S C+
Sbjct: 82 KLNVTKSATLPVACKLNAPPVSACD 106
>AT1G36150.1 | chr1:13528257-13529470 FORWARD LENGTH=257
Length = 256
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 29 QTGCTAALINLYPCLNYIS--GNETSPTRTCCSQLATVVQSQPQCLCAAXXXXXXXXXXX 86
T C++ + ++ CL++++ + SPT+TCC + TV+ P+CLC+A
Sbjct: 42 STDCSSVIYSMVDCLSFLTVGSTDPSPTKTCCVGVKTVLNYSPKCLCSA---LESSREMG 98
Query: 87 VTIDKTRALELPKACNV 103
+D T+AL +PK CNV
Sbjct: 99 FVLDDTKALAMPKICNV 115
>AT5G64080.1 | chr5:25645475-25646638 REVERSE LENGTH=183
Length = 182
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 32 CTAALINLYPCLNYIS--GNETSPTRTCCSQLATVVQSQPQCLCAAXXXXXXXXXXXVTI 89
C+ ++N+ CL+++S G P TCCS L TV+++ QCLC A VT+
Sbjct: 43 CSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCEA---FKSSASLGVTL 99
Query: 90 DKTRALELPKACNVVTPPASRC 111
+ T+A LP AC + P + C
Sbjct: 100 NITKASTLPAACKLHAPSIATC 121
>AT2G27130.1 | chr2:11595379-11596395 FORWARD LENGTH=177
Length = 176
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 32 CTAALINLYPCLNYIS--GNETSPTRTCCSQLATVVQSQPQCLCAAXXXXXXXXXXXVTI 89
C +++N+ C +Y+ NE P CC +LA +VQS P+C+C V +
Sbjct: 40 CLVSMLNVSDCFSYVQVGSNEIKPEAACCPELAGMVQSSPECVC-NLYGGGASPRFGVKL 98
Query: 90 DKTRALELPKACNVVTPPASRCN 112
DK RA +L C V P S C+
Sbjct: 99 DKQRAEQLSTICGVKAPSPSLCS 121
>AT1G55260.1 | chr1:20614663-20616158 FORWARD LENGTH=228
Length = 227
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 32 CTAALINLYPCLNYISGNETSPTRTCCSQLATVVQSQPQCLCAAXXXXXXXXXXXVTIDK 91
CT LI L C+ Y+ G+ +PT+ CC+ V++ +C+C + I+
Sbjct: 76 CTNQLIELSTCIPYVGGDAKAPTKDCCAGFGQVIRKSEKCVC-ILVRDKDDPQLGIKINA 134
Query: 92 TRALELPKACNVVTPPASRC 111
T A LP AC++ P + C
Sbjct: 135 TLAAHLPSACHITAPNITDC 154
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.129 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,970,028
Number of extensions: 41033
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 18
Length of query: 177
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 85
Effective length of database: 8,584,297
Effective search space: 729665245
Effective search space used: 729665245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)