BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0791200 Os03g0791200|J080304G13
         (78 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20960.1  | chr5:7116783-7122338 FORWARD LENGTH=1369            77   2e-15
AT3G43600.1  | chr3:15512778-15517375 REVERSE LENGTH=1322          75   6e-15
AT2G27150.1  | chr2:11601952-11607014 FORWARD LENGTH=1333          69   4e-13
AT1G04580.1  | chr1:1252212-1257510 REVERSE LENGTH=1338            68   1e-12

>AT5G20960.1 | chr5:7116783-7122338 FORWARD LENGTH=1369
          Length = 1368

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/45 (77%), Positives = 40/45 (88%)

Query: 1    GLVIHDSTWTYKIPTVDTIPKQFNVELINSARVHKRVLSSKASGE 45
            GLV+ DSTWTYKIPTVDTIP+QFNVE++NS +   RVLSSKASGE
Sbjct: 1252 GLVVTDSTWTYKIPTVDTIPRQFNVEILNSGQHKNRVLSSKASGE 1296



>AT3G43600.1 | chr3:15512778-15517375 REVERSE LENGTH=1322
          Length = 1321

 Score = 75.1 bits (183), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/45 (77%), Positives = 39/45 (86%)

Query: 1    GLVIHDSTWTYKIPTVDTIPKQFNVELINSARVHKRVLSSKASGE 45
            GL++ DSTWTYKIPTVDTIPKQFNVE++N     KRVLSSKASGE
Sbjct: 1205 GLLLTDSTWTYKIPTVDTIPKQFNVEILNGGCHEKRVLSSKASGE 1249



>AT2G27150.1 | chr2:11601952-11607014 FORWARD LENGTH=1333
          Length = 1332

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/45 (68%), Positives = 35/45 (77%)

Query: 1    GLVIHDSTWTYKIPTVDTIPKQFNVELINSARVHKRVLSSKASGE 45
            GLV+   TW YKIPTVDTIPK FNVE++N+     RVLSSKASGE
Sbjct: 1220 GLVVQQGTWDYKIPTVDTIPKHFNVEIVNTGHHKNRVLSSKASGE 1264



>AT1G04580.1 | chr1:1252212-1257510 REVERSE LENGTH=1338
          Length = 1337

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 36/45 (80%)

Query: 1    GLVIHDSTWTYKIPTVDTIPKQFNVELINSARVHKRVLSSKASGE 45
            GLV  + TW YKIPT+DTIPKQFNV+++NS     RVLSSKASGE
Sbjct: 1221 GLVNEEGTWDYKIPTIDTIPKQFNVQILNSGHHKNRVLSSKASGE 1265



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,450,352
Number of extensions: 37091
Number of successful extensions: 45
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 4
Length of query: 78
Length of database: 11,106,569
Length adjustment: 50
Effective length of query: 28
Effective length of database: 9,735,769
Effective search space: 272601532
Effective search space used: 272601532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)