BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0788300 Os03g0788300|AK069469
         (1184 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10650.1  | chr3:3325562-3330819 REVERSE LENGTH=1310           107   4e-23

>AT3G10650.1 | chr3:3325562-3330819 REVERSE LENGTH=1310
          Length = 1309

 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 142/457 (31%), Positives = 212/457 (46%), Gaps = 83/457 (18%)

Query: 3   KTFTRVEFDRLTDLLRARTVESDL--------------SAPADNLDNKNEARNTMDGIGG 48
           KTFTR E DRLT LLR++  +S                  P+   D  +    +M+ +  
Sbjct: 155 KTFTRSEVDRLTTLLRSKAADSSTMNEEQRNEVGMVVRHPPSHERDRTHPDNGSMNTLVS 214

Query: 49  STSHGM-AADHSIAADDPVCGASSPAELAKQYMNSRYSKENRPNSLRSQVLLKNKAEASN 107
           +    +   D  IA         SPA+LAK YM SR S E  P    S + L+ +A   +
Sbjct: 215 TPPGSLRTLDECIA---------SPAQLAKAYMGSRPS-EVTP----SMLGLRGQAGRED 260

Query: 108 IAYDRRRPGGPFVQE---LSQFSNENSELPV-NGYVTPGLHGRSAIYRMSCSPFFKGPSS 163
             +  R P   F Q+   +S  +  + + P+ NG+VTP   GRSA+Y M+ +P+ + P S
Sbjct: 261 SVFLNRTP---FPQKSPTMSLVTKPSGQRPLENGFVTPRSRGRSAVYSMARTPYSR-PQS 316

Query: 164 SNDINMSPFSSSQTRAN-SLVSGCRQV----LKRRGAELENELGSIGPIRRIRQKSNMMS 218
           S  I  S F +S ++   SL SG RQ     LKRR + L+N++GS+GP+RRIRQKSN   
Sbjct: 317 SVKIG-SLFQASPSKWEESLPSGSRQGFQSGLKRRSSVLDNDIGSVGPVRRIRQKSN--- 372

Query: 219 TFRDARSSPRGNFLPSRTIGSDLTDGGSPIRDSPSSKRLLLGTGQSVEPAEARRNDEDGK 278
                        L SR++         P+ +SP S R     G       ++ + ED  
Sbjct: 373 -------------LSSRSL-------ALPVSESPLSVR---ANGGEKTTHTSKDSAEDIP 409

Query: 279 ISSDNVLAASPQSNKMAEKIFEQLNIIVPSPKE---KLSLPQFAAGNASCSMS--KQPVR 333
            SS N++    +S++MA KI +QL+ +V + ++   KLS P    G A  S+   + P  
Sbjct: 410 GSSFNLVPT--KSSEMASKILQQLDKLVSTREKSPSKLS-PSMLRGPALKSLQNVEAPKF 466

Query: 334 QGNEPNGTSD-PSSSQKFQPMDSVKHSLDPELNGSPSSKDKLRKDGSSKLLSHSFKDLGN 392
            GN P   ++ P SS  +Q  +  + S+  E+    S K     DG+SK  S   +D+  
Sbjct: 467 LGNLPEKKANSPDSS--YQKQEISRESVSREVLAQ-SEKTGDAVDGTSKTGSSKDQDMRG 523

Query: 393 KDIRSDNXXXXXXXXXXXXKPGFKMAVFEDLPEFDDD 429
           K +                K  F+M+  ED  E DDD
Sbjct: 524 KGVYMP--LTNSLEEHPPKKRSFRMSAHEDFLELDDD 558



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.124    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,255,000
Number of extensions: 744739
Number of successful extensions: 2210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2206
Number of HSP's successfully gapped: 1
Length of query: 1184
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1074
Effective length of database: 8,090,809
Effective search space: 8689528866
Effective search space used: 8689528866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 117 (49.7 bits)