BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0787100 Os03g0787100|AK110858
         (123 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G44150.1  | chr3:15887617-15888728 FORWARD LENGTH=247          102   4e-23
AT2G15910.1  | chr2:6932917-6935333 REVERSE LENGTH=368            100   3e-22
AT3G11800.1  | chr3:3726154-3727562 FORWARD LENGTH=247             99   5e-22

>AT3G44150.1 | chr3:15887617-15888728 FORWARD LENGTH=247
          Length = 246

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 61/76 (80%), Gaps = 1/76 (1%)

Query: 35  GDTNGVYEPCADAAVQRGDGFTFGVAFAARGDFF-SGGVQLSPCDGRLSLASKGAKLAVF 93
           G+TN +Y PC+D  +QR DGFTFG+AF++R  FF +  V LSPCD RLSLA+  ++ +VF
Sbjct: 29  GNTNTIYSPCSDTRIQRSDGFTFGIAFSSRPSFFINQTVLLSPCDRRLSLAAMNSQFSVF 88

Query: 94  RPEVDEISLLTVNTSA 109
           RP++DEISLL++NTSA
Sbjct: 89  RPKIDEISLLSINTSA 104



>AT2G15910.1 | chr2:6932917-6935333 REVERSE LENGTH=368
          Length = 367

 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 5/85 (5%)

Query: 34  GGDTNGVYEPCADAAVQRGDGFTFGVAFAARGDFFSGGVQLSPCDGRLSLASKGAKLAVF 93
             D N VY PC+D  + +GDGFT G+A +++  FF   VQLSPCD RL LA+K A+LA+F
Sbjct: 142 AADNNPVYSPCSDTQISKGDGFTIGIAISSKEAFFLDQVQLSPCDTRLGLAAKMAQLALF 201

Query: 94  RPEVDEISLLTVNTSA-----AGGF 113
           RP+VDEISLL+++TS      AGGF
Sbjct: 202 RPKVDEISLLSIDTSKFNPSEAGGF 226



>AT3G11800.1 | chr3:3726154-3727562 FORWARD LENGTH=247
          Length = 246

 Score = 99.0 bits (245), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 60/86 (69%), Gaps = 4/86 (4%)

Query: 34  GGDTNGVYEPCADAAVQRGDGFTFGVAFAARGDFF----SGGVQLSPCDGRLSLASKGAK 89
            GD N VY PC+D+ V  GDGFTFG+AFAA+  FF    S  VQ SPCD R    +  ++
Sbjct: 22  AGDNNQVYSPCSDSTVAIGDGFTFGIAFAAKDSFFSTNRSKSVQYSPCDHRHLSLNGNSE 81

Query: 90  LAVFRPEVDEISLLTVNTSAAGGFDP 115
           +AVFRP+VDEI+LLT+NTS++  F P
Sbjct: 82  VAVFRPKVDEITLLTINTSSSSSFRP 107



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,018,238
Number of extensions: 69319
Number of successful extensions: 102
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 3
Length of query: 123
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 37
Effective length of database: 8,748,793
Effective search space: 323705341
Effective search space used: 323705341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)