BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0785800 Os03g0785800|AB071806
(312 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366 121 6e-28
AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325 120 7e-28
AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356 107 1e-23
AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362 106 2e-23
AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392 106 2e-23
AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421 104 5e-23
AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361 101 4e-22
AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243 99 3e-21
AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360 83 2e-16
AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357 77 1e-14
AT3G18550.1 | chr3:6383769-6385604 FORWARD LENGTH=434 75 6e-14
>AT4G18390.1 | chr4:10163212-10164309 REVERSE LENGTH=366
Length = 365
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/111 (58%), Positives = 74/111 (66%), Gaps = 5/111 (4%)
Query: 3 RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAI 62
RA+GGKDRHSKV T+KG RDRRVRLSV+TA+QFYDLQDRLG+DQPSKA+EWLI AA +I
Sbjct: 38 RASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSI 97
Query: 63 DTLPSLDXXXXXXXXXXXXXXXXTRRRSXXXXXXLSNKSGCSSTSETSKGS 113
LPSL+ T LS KS CSS S+TSK S
Sbjct: 98 SELPSLNNTHFPTDDENHQNQTLT----TVAANSLS-KSACSSNSDTSKNS 143
>AT1G30210.1 | chr1:10628754-10629728 REVERSE LENGTH=325
Length = 324
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 3 RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAI 62
RA+GGKDRHSKV T+KG+RDRR+RLSVATAIQFYDLQDRLGFDQPSKA+EWLINAAS +I
Sbjct: 46 RASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSI 105
Query: 63 DTLPSLD 69
LP L+
Sbjct: 106 TDLPLLN 112
>AT3G02150.2 | chr3:391522-392589 FORWARD LENGTH=356
Length = 355
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 55/66 (83%)
Query: 3 RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAI 62
RA GGKDRHSKV T +G+RDRRVRLSV TAIQ YDLQ+RLG DQPSKA++WL++AA I
Sbjct: 70 RAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEI 129
Query: 63 DTLPSL 68
D LP L
Sbjct: 130 DELPPL 135
>AT2G31070.1 | chr2:13220984-13222069 REVERSE LENGTH=362
Length = 361
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 2 VRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPA 61
+RATG KDRHSKV+T+KG RDRRVRLS TAIQFYD+QDRLG+D+PSKA++WLI A A
Sbjct: 24 IRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTA 83
Query: 62 IDTL 65
ID L
Sbjct: 84 IDKL 87
>AT1G53230.1 | chr1:19850260-19851435 REVERSE LENGTH=392
Length = 391
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 55/67 (82%)
Query: 2 VRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPA 61
VR+TG KDRHSKV TAKG RDRRVRLS TAIQFYD+QDRLGFD+PSKA++WLI A A
Sbjct: 44 VRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSA 103
Query: 62 IDTLPSL 68
ID L L
Sbjct: 104 IDDLAQL 110
>AT3G15030.1 | chr3:5062308-5063570 FORWARD LENGTH=421
Length = 420
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 55/67 (82%)
Query: 2 VRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPA 61
VR+TG KDRHSKV TAKG RDRRVRLS TAIQFYD+QDRLGFD+PSKA++WLI A +
Sbjct: 40 VRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTS 99
Query: 62 IDTLPSL 68
ID L L
Sbjct: 100 IDELAEL 106
>AT5G60970.1 | chr5:24535570-24536652 REVERSE LENGTH=361
Length = 360
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 51/66 (77%)
Query: 3 RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAI 62
R GGKDRHSKV T +G+RDRR+RLSV TAIQ YDLQDRLG QPSK I+WL+ AA +
Sbjct: 59 RTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDV 118
Query: 63 DTLPSL 68
D LP L
Sbjct: 119 DKLPPL 124
>AT5G08070.1 | chr5:2584885-2585613 FORWARD LENGTH=243
Length = 242
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 51/66 (77%)
Query: 3 RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAI 62
RA GGKDRHSKV T +G+RDRR+RLSV TAIQ YDLQ+RLG QPSK I+WL+ A +
Sbjct: 29 RAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEVAKNDV 88
Query: 63 DTLPSL 68
D LP L
Sbjct: 89 DLLPPL 94
>AT1G67260.1 | chr1:25168228-25169307 REVERSE LENGTH=360
Length = 359
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 46/62 (74%)
Query: 1 RVRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASP 60
++ KDRHSK+ TA+GIRDRRVRLS+ A QF+DLQD LGFD+ SK ++WL+ +
Sbjct: 81 EIKKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRK 140
Query: 61 AI 62
AI
Sbjct: 141 AI 142
>AT1G68800.1 | chr1:25847306-25848471 REVERSE LENGTH=357
Length = 356
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 45/63 (71%)
Query: 3 RATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAI 62
R +DRHSK+ TA+G RDRR+RLS+ A +F+DLQD LGFD+ SK IEWL + + +I
Sbjct: 108 RTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSI 167
Query: 63 DTL 65
L
Sbjct: 168 KQL 170
>AT3G18550.1 | chr3:6383769-6385604 FORWARD LENGTH=434
Length = 433
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 9 DRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAI 62
DRHSK+ TAKG RDRR+RLS+ A + + LQD LGFD+ SK +EWL+ A P I
Sbjct: 150 DRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEI 203
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.128 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,828,665
Number of extensions: 140384
Number of successful extensions: 251
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 11
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)