BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0784000 Os03g0784000|AK100003
(382 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G56000.1 | chr1:20944149-20946101 FORWARD LENGTH=385 375 e-104
AT1G55980.1 | chr1:20938899-20941813 REVERSE LENGTH=467 306 1e-83
AT3G04650.1 | chr3:1262017-1264343 FORWARD LENGTH=487 108 3e-24
>AT1G56000.1 | chr1:20944149-20946101 FORWARD LENGTH=385
Length = 384
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/344 (52%), Positives = 237/344 (68%), Gaps = 3/344 (0%)
Query: 31 LAARGVAVTLFDSXXXXXXXXXXXXEVMEDGTELRFDHGAPYFTVSNDEVARVVSGWEAR 90
LA GV+VT+FDS E+ EDG EL FDHGAP+F VSN + +V WE+R
Sbjct: 39 LARNGVSVTIFDSGRGPGGRMSQRREIGEDGKELMFDHGAPFFCVSNSDAMALVHEWESR 98
Query: 91 GLVAEWKAMFACFDREAGKFTDFEKEGTIKKYVGVPGMNSICKSLCLEDGVVAKFGVTIG 150
G V+EWK +F FD + KF ++EG KKYVGVPGMNSI K+LC E GV + FG I
Sbjct: 99 GFVSEWKQVFGSFDCASNKFLGIQQEGDAKKYVGVPGMNSISKALCNESGVKSMFGTGIA 158
Query: 151 RMDWIQDRSSWLLASLDGRDLGHFDYVVATDKNIASPRFSGLTGRXXXXXXXXXXXXXMM 210
+M+W+++ WLL G +LG FD VVA+DKNI SPRF+ +TG
Sbjct: 159 KMEWLEEEIPWLLTDSKGENLGRFDGVVASDKNIVSPRFTQVTGLPPPLDLSLVPELATK 218
Query: 211 IQDIPVRPCFALMLAFSEPLTKVPVQGFSFNNSDYLSWAFCDSSKPGRAHVPLNSQSWVL 270
+Q+IPV PCF+LMLAF EPL+ +PV+G SF NS+ LSWA C+S+KPGR+ +S+ W+L
Sbjct: 219 LQNIPVLPCFSLMLAFKEPLSSIPVKGLSFKNSEILSWAHCESTKPGRS---TDSERWIL 275
Query: 271 HSTAEYASKVINNIGPRKPSADALAKVAEELLKEFQATGLNIPQPIFMKAHRWGSAFPAI 330
HST +YA+ VI G +K S++ L K++EE+ KEFQ +GL P FMKAHRWGSAFPA
Sbjct: 276 HSTPDYANSVIAKTGLQKLSSETLNKISEEMFKEFQCSGLVSSLPFFMKAHRWGSAFPAK 335
Query: 331 AISGDDKCVWDKSMKLAICGDFCTSPSVEGAVLSGMRGASKILR 374
+I+ +++C+WD++ LAICGDFC SP+VEGA+LSG+ ASK+L+
Sbjct: 336 SIAVEERCLWDRNRNLAICGDFCVSPNVEGAILSGLAAASKLLQ 379
>AT1G55980.1 | chr1:20938899-20941813 REVERSE LENGTH=467
Length = 466
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 148/293 (50%), Positives = 193/293 (65%), Gaps = 3/293 (1%)
Query: 31 LAARGVAVTLFDSXXXXXXXXXXXXEVMEDGTELRFDHGAPYFTVSNDEVARVVSGWEAR 90
LA GV+VT+FDS E+ EDG EL FDHGAP+F VSN + +V WE+R
Sbjct: 177 LARNGVSVTIFDSGRGPGGRMSQRREIGEDGKELMFDHGAPFFCVSNSDAMALVHEWESR 236
Query: 91 GLVAEWKAMFACFDREAGKFTDFEKEGTIKKYVGVPGMNSICKSLCLEDGVVAKFGVTIG 150
G V+EWK +F FD + KF ++EG KKYVGVPGMNSI K+LC E GV + FG I
Sbjct: 237 GFVSEWKQVFGSFDCASNKFLGIQQEGDAKKYVGVPGMNSISKALCNESGVKSMFGTGIA 296
Query: 151 RMDWIQDRSSWLLASLDGRDLGHFDYVVATDKNIASPRFSGLTGRXXXXXXXXXXXXXMM 210
+M+W+++ WLL G +LG FD VVA+DKNI SPRF+ +TG
Sbjct: 297 KMEWLEEEIPWLLTDSKGENLGRFDGVVASDKNIVSPRFTQVTGLPPPLDLSLVPELATK 356
Query: 211 IQDIPVRPCFALMLAFSEPLTKVPVQGFSFNNSDYLSWAFCDSSKPGRAHVPLNSQSWVL 270
+Q+IPV PCF+LMLAF EPL+ +PV+G SF NS+ LSWA C+S+KPGR+ +S+ W+L
Sbjct: 357 LQNIPVLPCFSLMLAFKEPLSSIPVKGLSFKNSEILSWAHCESTKPGRS---TDSERWIL 413
Query: 271 HSTAEYASKVINNIGPRKPSADALAKVAEELLKEFQATGLNIPQPIFMKAHRW 323
HST +YA+ VI G +K S++ L K++EE+ KEFQ +GL P FMKAHRW
Sbjct: 414 HSTPDYANSVIAKTGLQKLSSETLNKISEEMFKEFQCSGLVSSLPFFMKAHRW 466
>AT3G04650.1 | chr3:1262017-1264343 FORWARD LENGTH=487
Length = 486
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 143/343 (41%), Gaps = 33/343 (9%)
Query: 31 LAARGVAVTLFDSXXXXXXXXXXXXEVMEDGTELRFDHGAPYFTVSNDEVARVVSGWEAR 90
L ARGV T+FD+ + G L FDH A +FT + ++V GW +
Sbjct: 111 LEARGVQSTVFDTGIHGLGGRLGTRIIEPQG--LIFDHAAQFFTADDSRFIKLVDGWLEK 168
Query: 91 GLVAEWKAMFACFDREAGKFTDFEKEGTIKKYVGVPGMNSICKSLCLEDGVVAKFGVTIG 150
GLV EWK A + E G + +Y+ GM S+ SL LE + V +
Sbjct: 169 GLVREWKG--AVGELEIGGSFSQFPSSSPPRYIAANGMRSLADSLLLESQM-----VNLV 221
Query: 151 RMDWIQD----RSSWLLASLDGRDLGHFDYVVATDKNIASPRFSGLTGRXXXXXXXXXXX 206
R WI W L S +G G FD +V + R +G
Sbjct: 222 RPCWISKLEPLNGMWHL-SENGTPRGQFDVIVIAHNGKCANRLLSASG---------LPL 271
Query: 207 XXMMIQDIPVRPCFALMLAFSEPLTKVPVQGFSFNNSDYLSWAFCDSSKPGRAHVPLNSQ 266
++ + + +AL+ AF +PL V +G + LSW +S+K G P
Sbjct: 272 VAKQMKKLDLSSIWALLAAFDDPLPTVNFEGAFVKGVESLSWMGNNSAKLGNGRTP--PH 329
Query: 267 SWVLHSTAEYASKVINNIGPRKPSADALAKVAEELLKEFQ-ATGL---NIPQPIFMKAHR 322
W STA Y + N + KV +L+ + A GL ++P+P++ +
Sbjct: 330 CWTFFSTAAYGKQ--NKVPQENIPTVTAEKVKAGMLQGVEIALGLPEGSLPKPVYTRLQL 387
Query: 323 WGSAFPAIAISGDDKCVWDKSMKLAICGDFCTSPSVEGAVLSG 365
WG+A P + C++D + ICGD+ ++E A +SG
Sbjct: 388 WGAALPKNTPA--VPCIFDPQGRAGICGDWLLGSNLESAAISG 428
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,459,568
Number of extensions: 299480
Number of successful extensions: 584
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 3
Length of query: 382
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 282
Effective length of database: 8,364,969
Effective search space: 2358921258
Effective search space used: 2358921258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)