BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0780900 Os03g0780900|AK100619
         (413 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44450.1  | chr5:17914360-17916017 REVERSE LENGTH=335          343   1e-94

>AT5G44450.1 | chr5:17914360-17916017 REVERSE LENGTH=335
          Length = 334

 Score =  343 bits (879), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 172/310 (55%), Positives = 210/310 (67%), Gaps = 38/310 (12%)

Query: 1   MDSRGFDSEGREFSSATEMWAHEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MD  G DSEG+EF+S  EMW  EI                                    
Sbjct: 59  MDICGVDSEGKEFNSVQEMWREEIGEGDETKKTQ-------------------------- 92

Query: 61  XXXXWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFG---AARRHL 117
               WY   ++YW+GVEAS +GVLGGYG VND D+ GS+ FL+ LL ER      A +HL
Sbjct: 93  ----WYRDGVSYWEGVEASVDGVLGGYGHVNDADIIGSEVFLKTLLQERLVNNVGANQHL 148

Query: 118 VALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCV 177
           VALDCGSGIGR+TKN L+R+FNEVDL+EPV+ FL+AA+ENL      G +THKA NF+CV
Sbjct: 149 VALDCGSGIGRITKNLLIRYFNEVDLLEPVAQFLDAARENLASA---GSETHKATNFFCV 205

Query: 178 PLQDFTPDEGRYDVIWIQWCIGQLPDDDFISFFNRAKIGLKPNGFFVLKENIARNGFVLD 237
           PLQ+FTP  GRYDVIW+QWCIG L D+DF+SFFNRAK  LKP GFFV+KEN+A+NGFVLD
Sbjct: 206 PLQEFTPAAGRYDVIWVQWCIGHLTDNDFVSFFNRAKGYLKPGGFFVVKENLAKNGFVLD 265

Query: 238 KEDNSITRSDAYFKELFKKCGLYIHSIKDQSDLPKELFAVKMYALVTEK-PKIQKNGKRR 296
           KED+SITRSD YFK+LF++CGL+++  KDQ  LP+ELFAVKMYAL  +  PKI +   + 
Sbjct: 266 KEDHSITRSDPYFKQLFRQCGLHLYRTKDQKGLPQELFAVKMYALTVDTPPKIHRTRSKT 325

Query: 297 RPKNSPPVEK 306
           R  N P + K
Sbjct: 326 R-SNRPQIIK 334



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,883,317
Number of extensions: 389610
Number of successful extensions: 971
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 969
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 312
Effective length of database: 8,337,553
Effective search space: 2601316536
Effective search space used: 2601316536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)