BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0777500 Os03g0777500|AK062835
(183 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32580.1 | chr2:13827849-13829135 FORWARD LENGTH=184 128 2e-30
AT1G05070.1 | chr1:1457172-1458531 REVERSE LENGTH=185 125 9e-30
AT4G04360.1 | chr4:2133142-2133866 REVERSE LENGTH=177 103 6e-23
AT2G24290.1 | chr2:10338779-10339859 FORWARD LENGTH=174 89 1e-18
AT4G30996.1 | chr4:15101464-15102461 FORWARD LENGTH=173 87 4e-18
>AT2G32580.1 | chr2:13827849-13829135 FORWARD LENGTH=184
Length = 183
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 88/150 (58%), Gaps = 3/150 (2%)
Query: 33 YIVGPQLYWHASEALGRSTGXXXXXXXXXXXXXXXXXPEDCSK-QFKDVKSR--ASGEET 89
YI+GP LYWH +EAL S P S F D R E+T
Sbjct: 22 YILGPPLYWHLTEALAVSATSCSACVCDCSSLPLLTIPTGLSNGSFTDCAKRDPEVNEDT 81
Query: 90 EKSFTELLIEELKXXXXXXXXXXXXXDVKLLEAKKLASQYQKEADKCSSGMDTCEEAREK 149
EK++ ELL EELK D LLEAKK+ S YQKEADKC+SGM+TCEEAREK
Sbjct: 82 EKNYAELLTEELKQREAASMEKHKRVDTGLLEAKKITSSYQKEADKCNSGMETCEEAREK 141
Query: 150 SSEALVEQRKLTALWEERARELGWKPGNIK 179
+ +ALVEQ+KLT++WE+RAR+ G+K G K
Sbjct: 142 AEKALVEQKKLTSMWEQRARQKGYKDGATK 171
>AT1G05070.1 | chr1:1457172-1458531 REVERSE LENGTH=185
Length = 184
Score = 125 bits (315), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 92/158 (58%), Gaps = 14/158 (8%)
Query: 33 YIVGPQLYWHASEALGR-STGXXXXXXXXXXXXXXXXXPE--------DCSKQFKDVKSR 83
YI+GP LYWH +EAL S P+ DC+K +V
Sbjct: 22 YILGPPLYWHLTEALAAVSASSCPSCPCECSTYSAVTIPKELSNASFADCAKHDPEV--- 78
Query: 84 ASGEETEKSFTELLIEELKXXXXXXXXXXXXXDVKLLEAKKLASQYQKEADKCSSGMDTC 143
E+TEK++ ELL EELK D+ LLEAKK+ S YQKEADKC+SGM+TC
Sbjct: 79 --NEDTEKNYAELLTEELKLREAESLEKHKRADMGLLEAKKVTSSYQKEADKCNSGMETC 136
Query: 144 EEAREKSSEALVEQRKLTALWEERARELGWKPGNIKPH 181
EEAREK+ AL EQ+KLT+ WEERAR+ GW+ G+ KP+
Sbjct: 137 EEAREKAELALAEQKKLTSRWEERARQKGWREGSTKPN 174
>AT4G04360.1 | chr4:2133142-2133866 REVERSE LENGTH=177
Length = 176
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 33 YIVGPQLYWHASEALGRST-GXXXXXXXXXXXXXXXXXPEDCSKQ-FKD-VKSRASGEET 89
YI GP LYWH +E + S P+ S F D ++ EE+
Sbjct: 23 YIAGPSLYWHLNETIADSLHSSCPPCVCDCSSQPLLSIPDGLSNHSFLDCMRHEEGSEES 82
Query: 90 EKSFTELLIEELKXXXXXXXXXXXXXDVKLLEAKKLASQYQKEADKCSSGMDTCEEAREK 149
E SFTE++ EELK D LL+AKK ASQYQKEADKCS GM+TCE AREK
Sbjct: 83 ESSFTEMVAEELKLREAQAQEDEWRADRLLLDAKKAASQYQKEADKCSMGMETCELAREK 142
Query: 150 SSEALVEQRKLTALWEERARELGWKPGNI 178
+ AL EQR+L+ +WE RAR+ GWK G +
Sbjct: 143 AEAALDEQRRLSYMWELRARQGGWKEGTV 171
>AT2G24290.1 | chr2:10338779-10339859 FORWARD LENGTH=174
Length = 173
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 59/87 (67%)
Query: 87 EETEKSFTELLIEELKXXXXXXXXXXXXXDVKLLEAKKLASQYQKEADKCSSGMDTCEEA 146
EE EK F +LL EELK +V L EAK++ASQYQKEA+KC++ + CE A
Sbjct: 84 EEMEKPFVDLLTEELKLQEAVADEHSRHMNVTLAEAKRVASQYQKEAEKCNAATEICESA 143
Query: 147 REKSSEALVEQRKLTALWEERARELGW 173
RE++ L+++RK+T LWE RAR+LGW
Sbjct: 144 RERAQALLLKERKITFLWERRARQLGW 170
>AT4G30996.1 | chr4:15101464-15102461 FORWARD LENGTH=173
Length = 172
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 33 YIVGPQLYWHASEALGRSTGXXXXXXXXXXXXXXXXXPEDCSKQFKDVKSRASG------ 86
+ GP LYW ++ ST + ++ G
Sbjct: 22 VVCGPALYWKFNKGFVGSTRANSLCPPCVCDCPPPLSLLQIAPGLANLSITDCGSDDPEL 81
Query: 87 -EETEKSFTELLIEELKXXXXXXXXXXXXXDVKLLEAKKLASQYQKEADKCSSGMDTCEE 145
+E EK F +LL EELK +V L EAK++ASQYQKEA+KC++ + CE
Sbjct: 82 KQEMEKQFVDLLTEELKLQEAVADEHSRHMNVTLAEAKRVASQYQKEAEKCNAATEICES 141
Query: 146 AREKSSEALVEQRKLTALWEERARELGW 173
ARE++ L+++RK+T+LWE+RAR+ GW
Sbjct: 142 ARERAEALLIKERKITSLWEKRARQSGW 169
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.125 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,417,460
Number of extensions: 65793
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 5
Length of query: 183
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 91
Effective length of database: 8,584,297
Effective search space: 781171027
Effective search space used: 781171027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 108 (46.2 bits)