BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0777100 Os03g0777100|J033034J15
         (347 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30820.1  | chr2:13129800-13132391 FORWARD LENGTH=422          120   9e-28
AT1G06660.1  | chr1:2037461-2040148 REVERSE LENGTH=482            110   1e-24
AT1G04030.1  | chr1:1040597-1042313 FORWARD LENGTH=435             62   4e-10

>AT2G30820.1 | chr2:13129800-13132391 FORWARD LENGTH=422
          Length = 421

 Score =  120 bits (302), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 66/93 (70%), Gaps = 11/93 (11%)

Query: 247 DRPIIGLVAAHWRDTEPDTFTPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSD 306
           DRPIIG+VAAHW + E    +PKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALS+
Sbjct: 328 DRPIIGMVAAHWNEKEHSQISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSE 387

Query: 307 E---KLLSQRKCSSGNTSQLSGLEGEENDTAAS 336
           E     +  R+        L  +E  E DTA S
Sbjct: 388 EGGQGFIPPRR--------LGTVEESERDTAIS 412



>AT1G06660.1 | chr1:2037461-2040148 REVERSE LENGTH=482
          Length = 481

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/71 (73%), Positives = 55/71 (77%), Gaps = 3/71 (4%)

Query: 247 DRPIIGLVAAHWRDTEPDTFTPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSD 306
           DRPIIGLVAA W + E    +PK WDGNGIPNST KYKEDQKVSWHATPFE RLEKALS+
Sbjct: 382 DRPIIGLVAAQWIENEQTEISPKMWDGNGIPNSTTKYKEDQKVSWHATPFEVRLEKALSE 441

Query: 307 EK---LLSQRK 314
           E    L  QRK
Sbjct: 442 EGGQSLFPQRK 452



>AT1G04030.1 | chr1:1040597-1042313 FORWARD LENGTH=435
          Length = 434

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%)

Query: 234 TSDRSHSAKSSEEDRPIIGLVAAHWRDTEPDTFTPKWWDGNGIPNSTNKYKEDQKVSWHA 293
           TS    S   S ++ PIIG V  +W +              GIPN+++KY+ED+ V+WH+
Sbjct: 359 TSTPRKSPSKSPDETPIIGTVGGYWGNRSKAIDCGSASSFKGIPNTSSKYREDKSVNWHS 418

Query: 294 TPFEERLEKALSD 306
           TPFE RLEKAL++
Sbjct: 419 TPFEARLEKALNN 431



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.122    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,413,989
Number of extensions: 377323
Number of successful extensions: 1096
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1095
Number of HSP's successfully gapped: 3
Length of query: 347
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 248
Effective length of database: 8,392,385
Effective search space: 2081311480
Effective search space used: 2081311480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 112 (47.8 bits)