BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0775500 Os03g0775500|AK121695
(154 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G50845.1 | chr3:18900107-18901209 REVERSE LENGTH=155 174 1e-44
AT1G68310.1 | chr1:25599812-25601239 FORWARD LENGTH=160 150 2e-37
AT3G09380.1 | chr3:2885265-2886116 REVERSE LENGTH=157 110 4e-25
>AT3G50845.1 | chr3:18900107-18901209 REVERSE LENGTH=155
Length = 154
Score = 174 bits (442), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 106/153 (69%), Gaps = 3/153 (1%)
Query: 1 MTVGMINANPVVHERPE---RXXXXXXXXXXXXLDVFDTVRDIKDPEHPYXXXXXXXXXX 57
MT+G+INANPVV + E R L+++D VRDI+DPEHPY
Sbjct: 1 MTLGLINANPVVQAKKEGLVRREDQYRDDGVDPLEIYDYVRDIRDPEHPYTLEQLRVVSE 60
Query: 58 XXXXXDEKLGRIQITFTPTVQHCSMATVIGLCLRLKLMQNFPPHFKIDIKVAPGSLANEE 117
D+KL RI ITFTPT+QHCSMA +IGLCLR KL + H+K+DI+V+PGS A+E
Sbjct: 61 ESVTVDDKLDRILITFTPTIQHCSMANIIGLCLRAKLKECLQLHYKVDIRVSPGSHADEV 120
Query: 118 SVNKQLNDKERVAAALENPNLRQLVDECLCSND 150
SVNKQLNDKERV AALENPNLRQLVDEC+ S++
Sbjct: 121 SVNKQLNDKERVVAALENPNLRQLVDECIYSDE 153
>AT1G68310.1 | chr1:25599812-25601239 FORWARD LENGTH=160
Length = 159
Score = 150 bits (379), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 104/159 (65%), Gaps = 9/159 (5%)
Query: 1 MTVGMINANPVVHERPERXXXXXXXXXXX-------XLDVFDTVR--DIKDPEHPYXXXX 51
M G+IN NP+++ + ER L++FD + +IKDPEHP
Sbjct: 1 MVSGLINENPIIYPKKERRLRTDTSITDELTPEPIDQLEIFDILSSSNIKDPEHPNTLED 60
Query: 52 XXXXXXXXXXXDEKLGRIQITFTPTVQHCSMATVIGLCLRLKLMQNFPPHFKIDIKVAPG 111
D++ +++TFTPTV+HCSMATVIGLC+R+KL+++ P +KIDI+VAPG
Sbjct: 61 LRVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKIDIRVAPG 120
Query: 112 SLANEESVNKQLNDKERVAAALENPNLRQLVDECLCSND 150
S A E+++NKQLNDKERVAAALENPNL ++VDECL S +
Sbjct: 121 SHATEDALNKQLNDKERVAAALENPNLVEMVDECLPSEE 159
>AT3G09380.1 | chr3:2885265-2886116 REVERSE LENGTH=157
Length = 156
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 5 MINANPVVHERPERXXXXXXXXXXXXLDVFDTVRDIKDPEHP-YXXXXXXXXXXXXXXXD 63
+ N NP+++ + R + +RDIKDPEHP D
Sbjct: 12 LTNKNPIIYPKRTRRYRTDQSSTDE-FSSTNRIRDIKDPEHPELSLEDLNVLTEESVEVD 70
Query: 64 EKLGRIQITFTPTVQHCSMATVIGLCLRLKLMQNFPPHFKIDIKVAPGSLANEESVNKQL 123
+ ++ITFTPT+ HC + T IGLC+ +KL+Q+ P FK+D++VAPGS E +VNKQL
Sbjct: 71 DHKSYVRITFTPTLPHCHLPTHIGLCILVKLVQSLPARFKVDVRVAPGSHDKETTVNKQL 130
Query: 124 NDKERVAAALENPNLRQLVDECL 146
DKERV AALENP L L+++ +
Sbjct: 131 GDKERVTAALENPELVALLNKMM 153
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,838,009
Number of extensions: 90237
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 64
Effective length of database: 8,639,129
Effective search space: 552904256
Effective search space used: 552904256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)