BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0774400 Os03g0774400|AK109683
         (150 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42765.1  | chr5:17150505-17151641 REVERSE LENGTH=230          124   2e-29

>AT5G42765.1 | chr5:17150505-17151641 REVERSE LENGTH=230
          Length = 229

 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 83/108 (76%)

Query: 1   MLAAAGRDCVPRQRNSLVSLQSRSGVEVCTFSLILKNAASLLTDKDPLKVEADARLAELI 60
           +  ++ RDCVP++R+SLV  QS+SGVEVCTF L++KNAASLL DKDP+K+EA+  L +L+
Sbjct: 122 LFKSSARDCVPKERSSLVDFQSKSGVEVCTFKLVVKNAASLLDDKDPVKLEAENILDDLV 181

Query: 61  QSFSDLGTVVDNSNIELTADREKMKDGLLSTVSAIDKFEQSVKDCLAV 108
           +SF  L  + +  ++ L +DR+K+ DG+  T+S +DKFE+ VKDCL +
Sbjct: 182 RSFGSLIVLTNGVDMNLPSDRKKVADGVTETISYLDKFEKGVKDCLEI 229



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,817,984
Number of extensions: 98365
Number of successful extensions: 341
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 60
Effective length of database: 8,639,129
Effective search space: 518347740
Effective search space used: 518347740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)