BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0769900 Os03g0769900|J100031D15
(367 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10150.1 | chr1:3326160-3327404 FORWARD LENGTH=415 248 4e-66
AT1G59510.1 | chr1:21859768-21860913 FORWARD LENGTH=382 222 2e-58
AT3G49790.1 | chr3:18468296-18469396 REVERSE LENGTH=367 197 5e-51
>AT1G10150.1 | chr1:3326160-3327404 FORWARD LENGTH=415
Length = 414
Score = 248 bits (633), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 135/391 (34%), Positives = 206/391 (52%), Gaps = 36/391 (9%)
Query: 6 VAFSHRRRRWILLXXXXXXXXXXXYKIYHHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 65
+ S RRR+W++ YK+YH P
Sbjct: 11 IFLSQRRRKWLIFMAISGVSGYGAYKVYHLPSVARKRKRLFKLFGAIVSVAELISDSAET 70
Query: 66 XXXXXXXXXDFVRSGSDELPRSVTQLAKLAASPEVSATVSAISEAITAGILRXXXXXXXX 125
DF+ S SDE+P S+ Q+AK+ S E + ++S +S+A+T G R
Sbjct: 71 LSMVSRDVKDFLNSDSDEIPNSLKQIAKITTSNEFTDSLSRVSQAVTIGAFRGYKSESSI 130
Query: 126 -----XXXXXVALSDRLVDRLFSESGERLAAAIAGSFARHLVAAIYSASSTPG------E 174
++ DR++D++FSE+G + + GSFA++LV YS G +
Sbjct: 131 GDSGIEKSSDSSVVDRVIDKVFSEAGTGFVSVVVGSFAKNLVLGFYSGKVESGVKCEGSD 190
Query: 175 TSSPMKWVNLIATGKGQKAISNWVEVFVSTAVGVFVDKTIHINTYDQLFQGLTNASHDAK 234
+S +WV L+ K ++ +++ +E F STA+GV++DKT+ INTYDQ+F+GLTN H
Sbjct: 191 SSETPRWVTLLGDDKCRELLADCIERFTSTAIGVYLDKTMDINTYDQIFEGLTNPKHQDS 250
Query: 235 VKELLVSVCNGAVETMVKATHHVMSNA------------NYKSVG---------SGSNGA 273
VK++LVSVCNGA+ET+V+ +H V +++ ++KS G SG
Sbjct: 251 VKDVLVSVCNGALETIVRTSHDVFTSSRSKNVIEEIEDDDFKSNGSARSKMVSESGDGVK 310
Query: 274 GEGWVETVSSTLAVPSNRKFVLDVTGRVTFETVRSFLEFALWKMHAGAKKGGNT----VM 329
GW E +++TLAVPSNR+F+ DVTGRVT ET RS + F + K G +K N V
Sbjct: 311 SNGWTEAIATTLAVPSNRRFMFDVTGRVTLETTRSIIAFIMVKTFQGFRKSINVVHEEVT 370
Query: 330 DSGLRAMQYMTDKSMVIATICITLCLHVLNG 360
D G +A++Y+ KS VI T+C+ L LH+++G
Sbjct: 371 DRGRQAVEYVGAKSSVIITVCLALYLHIISG 401
>AT1G59510.1 | chr1:21859768-21860913 FORWARD LENGTH=382
Length = 381
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/357 (33%), Positives = 189/357 (52%), Gaps = 11/357 (3%)
Query: 10 HRRRRWILLXXXXXXXXXXXYKIYHHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 69
RRR+W++L Y++Y+
Sbjct: 15 QRRRKWLILLAVFGVSGYGVYRVYNSQYIAKKTKRLMKLFSGIVSFAEMVIDSAETISIV 74
Query: 70 XXXXXDFVRSGSDELPRSVTQLAKLAASPEVSATVSAISEAITAGILRXXXXXXXXXXXX 129
+F+ S S E+P S+ QL+K+ S E + +++ +SEA+ G+ R
Sbjct: 75 SRDLKEFLESNSHEIPNSLKQLSKITKSKEFTDSLARVSEAVAIGVFRGYNSDPNVEKES 134
Query: 130 XVALSDRLVDRLFSESGERLAAAIAGSFARHLVAAIYSASSTPGETSS-PMKWVNLIATG 188
+++ VDR+FSE G + + GSFA++LV YS G S +W+NL++
Sbjct: 135 NLSV----VDRVFSEEGAGFVSVVVGSFAKNLVLGFYSGEIEIGSDDSLKPRWMNLLSDD 190
Query: 189 KGQKAISNWVEVFVSTAVGVFVDKTIHINTYDQLFQGLTNASHDAKVKELLVSVCNGAVE 248
K ++ +++ +E F S+AV V++DKT+ +NTYDQ+F GLTN H +++LVSVCNGA+E
Sbjct: 191 KCRELLADCIERFTSSAVSVYIDKTVGVNTYDQIFAGLTNPKHRDSARDVLVSVCNGALE 250
Query: 249 TMVKATHHVMSNANYKSVGS--GSNGAGEGWVETVSSTLAVPSNRKFVLDVTGRVTFETV 306
T ++ +H V +++ K+ S S GW E +S+TLAVPSNRKF+ DVTGRVT ET+
Sbjct: 251 TFMRTSHDVFTSSGEKTDSSLRKSENRENGWAEALSTTLAVPSNRKFMFDVTGRVTLETM 310
Query: 307 RSFLEFALWKMHAGAKKGGNT----VMDSGLRAMQYMTDKSMVIATICITLCLHVLN 359
RS LEF + K K+ + V + G + + Y+ KS VI T+C+ + H+ N
Sbjct: 311 RSILEFVILKTSQSFKRSLDVIHEEVTERGRQVVGYVGAKSSVIITVCLAVYFHIFN 367
>AT3G49790.1 | chr3:18468296-18469396 REVERSE LENGTH=367
Length = 366
Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 175/310 (56%), Gaps = 20/310 (6%)
Query: 8 FSHRRRRWILLXXXXXXXXXXXYKIYHHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 67
F+ + ++WILL +++YH P
Sbjct: 14 FALKNKKWILLAVSGYGA----FRVYHSPSISQKRKRISKLFTLLLNLIEAASDSAETVS 69
Query: 68 XXXXXXXDFVRSGSDELPRSVTQLAKLAASPEVSATVSAISEAITAGILRXXXXXXXXXX 127
+F+RS SD++P S+ Q++K+A S E+++++ ++A+T G++R
Sbjct: 70 VISKDLTEFLRSDSDQIPNSLKQISKIAKSDELNSSLIRFTQAMTVGLIRGIDDGSGS-- 127
Query: 128 XXXVALSDRLVDRLFSESGERLAAAIAGSFARHLVAAIYSASSTPGETSSPMKWVNLIAT 187
+DR++D+LF++SG A+AI GSFAR+LV A+YS++ G+ S+ K ++ + +
Sbjct: 128 ----GFTDRVMDKLFTKSGSGFASAIVGSFARNLVVALYSSA---GDGSNS-KLLDAVFS 179
Query: 188 GKGQKAISNWVEVFVSTAVGVFVDKTIHINTYDQLFQGLTNASHDAKVKELLVSVCNGAV 247
G++ I + V+ FVSTAV V++DKT +N +D LF GLTN H+ KVK+ LV++CN AV
Sbjct: 180 DDGRRLIGDCVQRFVSTAVSVYLDKTSDVNVFDDLFAGLTNPKHEGKVKQTLVTLCNSAV 239
Query: 248 ETMVKATHHVMSNANYKSVGSGSNGAGEG------WVETVSSTLAVPSNRKFVLDVTGRV 301
ET V+A+ + S S G W++ VSS+L+VPSNRK+V+D+TGRV
Sbjct: 240 ETFVRASRKPVQLNRSSSCQDSSQTLTVGSTKQATWIDRVSSSLSVPSNRKYVVDLTGRV 299
Query: 302 TFETVRSFLE 311
TFETVRS LE
Sbjct: 300 TFETVRSLLE 309
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,888,458
Number of extensions: 202455
Number of successful extensions: 551
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 3
Length of query: 367
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,364,969
Effective search space: 2233446723
Effective search space used: 2233446723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)