BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0769600 Os03g0769600|AK100054
         (564 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49380.1  | chr1:18276794-18279204 FORWARD LENGTH=548          696   0.0  

>AT1G49380.1 | chr1:18276794-18279204 FORWARD LENGTH=548
          Length = 547

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/437 (75%), Positives = 378/437 (86%), Gaps = 1/437 (0%)

Query: 126 PLAISEMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDHMFSSP 185
           PLAI+EMF IAALMALGTVI+QGE P +YF+K+PEDNPV GF TWRWI T G DHM+S+P
Sbjct: 112 PLAITEMFTIAALMALGTVIEQGETPDFYFQKYPEDNPVLGFFTWRWISTLGLDHMYSAP 171

Query: 186 VFXXXXXXXXXXXXXCTYTTQIPIVKVARRWSFMHSAGSIRKQEFAESLPRASIQDLGVI 245
           +F             CTYTTQIP+VKVARRWSFM S  +I+KQEFA++LPRASIQDLG+I
Sbjct: 172 IFLGMLVLLAASLMACTYTTQIPLVKVARRWSFMKSDEAIKKQEFADTLPRASIQDLGMI 231

Query: 246 LMGYGYEVFTKGPSLYAFKGLAGRFAPIGVHIAMIFIMAGATLSATGSFKGSVDVPQGLN 305
           LMG G+EVF KGPSLYAFKGLAGRFAPIGVHIAM+ IM G TLSATGSF+GSV VPQGLN
Sbjct: 232 LMGDGFEVFMKGPSLYAFKGLAGRFAPIGVHIAMLLIMVGGTLSATGSFRGSVTVPQGLN 291

Query: 306 FVIGDVMKPKGVLSFVPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFDLDGKEVMRKT 365
           FV+GDV+ P G  S   D FNTEVHVNRF M+YYDSGEVSQF+SDLSL DL+GKEV+RKT
Sbjct: 292 FVMGDVLAPIGFFSIPTDAFNTEVHVNRFTMDYYDSGEVSQFHSDLSLRDLNGKEVLRKT 351

Query: 366 IKVNDPLRYGGVTIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTLLPLENSG 425
           I VNDPLRYGGVT+YQTDW FSALQV K+GEGPFNLAMAP+K+NGDKKL+GT LP+ ++ 
Sbjct: 352 ISVNDPLRYGGVTVYQTDWSFSALQVTKDGEGPFNLAMAPIKINGDKKLYGTFLPVGDTN 411

Query: 426 SSNVKGISMLARDLQSIVLYDQEGKFVGVRRPSSKLPIEIDGNEIVIEDAIGSTGLDLKT 485
           + NVKGISMLARDLQSIV+YD +GKF G+RRPSSKLPIEI+G +IVIEDAIGSTGL+LKT
Sbjct: 412 APNVKGISMLARDLQSIVVYDLDGKFAGIRRPSSKLPIEINGMKIVIEDAIGSTGLELKT 471

Query: 486 DPGIPIVYAGFGALMLTTCISYLSHSQIWALQDGSTVVIGGKTNRAKLEFSEEMNRLLDK 545
           DPG+P+VYAGFGALMLTTCISYLSHSQIWALQ+G+ +V+GGKTNRAK +F ++MNRLLD+
Sbjct: 472 DPGVPVVYAGFGALMLTTCISYLSHSQIWALQNGTALVVGGKTNRAKNQFPDDMNRLLDQ 531

Query: 546 VPELISVNEKKIDSKQS 562
           VPELI  N   + S+QS
Sbjct: 532 VPELIKKNTSVV-SEQS 547



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,633,842
Number of extensions: 426081
Number of successful extensions: 840
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 840
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 460
Effective length of database: 8,255,305
Effective search space: 3797440300
Effective search space used: 3797440300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)