BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0765100 Os03g0765100|AK062731
         (221 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47310.1  | chr1:17343082-17344618 FORWARD LENGTH=396           82   2e-16
AT5G64510.1  | chr5:25784592-25786152 FORWARD LENGTH=425           47   6e-06

>AT1G47310.1 | chr1:17343082-17344618 FORWARD LENGTH=396
          Length = 395

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 5/161 (3%)

Query: 61  SHDTVELLSEKCEVDVANRLISVCVFCSISSRLPRLDKILKTWFSNKTQDSKSMQFIQAK 120
           S + + L +EKC                +  ++ +L+K+L +   N T+ + S   + AK
Sbjct: 240 SDEAIHLYAEKCYYKAHTYRQHRFPNDLLGLKIHKLEKVLNS-LGNGTRQTVSS--VTAK 296

Query: 121 VTSIPLIKFRLELERDITEEDGIWENISKWKTVPMVQRVALDVVAKVEEEGRLKAMSXXX 180
           + +  +++F+LE+ER I + + +      W+T P ++RV  +V AK+E + +LKA+    
Sbjct: 297 LKASGMVRFQLEIERSIGKNESVISKKVAWRTKPKIERVWFEVTAKIEGD-KLKAV-RLR 354

Query: 181 XXXXXXXXDASSWSSLTSNISFTKFMSFVLPPEPLTLDVKW 221
                   D  +WSSL SN+SFTKF S ++P E LTLDVKW
Sbjct: 355 KVVPFIEVDTEAWSSLMSNMSFTKFPSLLVPQEALTLDVKW 395



>AT5G64510.1 | chr5:25784592-25786152 FORWARD LENGTH=425
          Length = 424

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 96  LDKILKTWFSNKTQDSKSMQFIQAKVTSIPLIKFRLELERDITEEDGIWENISKWKTVPM 155
            +K+L +    K Q+  S + ++AKV +   +K    +E+ + E D    +  +W+T P 
Sbjct: 305 FEKLLTSVLGPKAQEKGSFKVLKAKVAAQTFMKIGFGIEKKLKEADVEGLSFPEWRTKPE 364

Query: 156 VQRVALDVVAKVEEEGRLKAMSXXXXXXXXXXXDASSWSSLTSNISFTKFMSFVLPPEPL 215
             R+  +V+AKV+ E  +               D  + + +T N++ +K      PP P 
Sbjct: 365 TMRMHFEVLAKVDGENVIP--ENVMRVDPIPLEDTIAQNVITGNVTMSKLPIIESPPSPF 422

Query: 216 TL 217
           TL
Sbjct: 423 TL 424



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,216,842
Number of extensions: 136075
Number of successful extensions: 362
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 126
Effective length of database: 8,502,049
Effective search space: 1071258174
Effective search space used: 1071258174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)