BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0764000 Os03g0764000|Os03g0764000
(399 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G23060.1 | chr2:9812839-9814633 REVERSE LENGTH=414 455 e-128
AT4G37580.1 | chr4:17658932-17660564 FORWARD LENGTH=404 449 e-126
AT5G67430.1 | chr5:26910429-26911856 FORWARD LENGTH=387 378 e-105
AT2G30090.1 | chr2:12843583-12845597 REVERSE LENGTH=387 266 2e-71
>AT2G23060.1 | chr2:9812839-9814633 REVERSE LENGTH=414
Length = 413
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/389 (56%), Positives = 278/389 (71%), Gaps = 25/389 (6%)
Query: 32 GGEAKMCLFTDLLGDPLCRIRNSPAYLMLVAETAXXXXXXXXXXXXXXXXXCVKTVVSGG 91
G K+ LFTDLLGDP+CR+R+SP+YLMLVAE C+KTV G
Sbjct: 29 GPAGKLSLFTDLLGDPICRVRHSPSYLMLVAEIGPKEKKELVGMIRG----CIKTVTCGI 84
Query: 92 SVQ-------------AGKDPIYSKVAYILGLRVSPRYRRKGVGKKLVGRMEEWFRQSGA 138
+ + P+Y+K+AYILGLRVSP +RR+G+G KLV ME+WF Q+GA
Sbjct: 85 TTKRLDLTHNKSQNDVVITKPLYTKLAYILGLRVSPTHRRQGIGFKLVKAMEDWFSQNGA 144
Query: 139 EYSYMATEQDNEASVRLFTGRCGYSKFRTPSVLVHPVFGHALQPSRNAAIRKLEPREAEL 198
EYSY ATE DN ASV LFTG+CGY++FRTPS+LV+PV+ H + SR + KLEP +AEL
Sbjct: 145 EYSYFATENDNHASVNLFTGKCGYAEFRTPSILVNPVYAHRVNISRRVTVIKLEPSDAEL 204
Query: 199 LYRWHFAAVEFFPADIDAVLSKELSLGTFLAVPAGT-------RWESVEAFMDAPPASWA 251
LYR F+ EFFP DID+VL+ +LSLGTF+AVP G+ W F++ PP SWA
Sbjct: 205 LYRLRFSTTEFFPRDIDSVLNNKLSLGTFVAVPRGSCYGSGSRSWPGSAKFLEYPPDSWA 264
Query: 252 VMSVWNCMDAFRLEVRGAPRLMRAAAVATRLVDRAAPWLKIPSIPNLFAPFGLYFLYGVG 311
V+SVWNC D+FRLEVRGA RL R + ATR+VD+ P+LKIPSIP +F PFGL+F+YG+G
Sbjct: 265 VLSVWNCKDSFRLEVRGASRLRRVVSKATRMVDKTLPFLKIPSIPAVFRPFGLHFMYGIG 324
Query: 312 GAGPASPRLVRALCRHAHNMARKGGCGVVATEVSACEPVRAGVPHWARLG-AEDLWCIKR 370
G GP + ++V+ALC HAHN+A++GGCGVVA EV+ EP+R G+PHW L AEDLWCIKR
Sbjct: 325 GEGPRAEKMVKALCDHAHNLAKEGGCGVVAAEVAGEEPLRRGIPHWKVLSCAEDLWCIKR 384
Query: 371 LADGYNHGPLGDWTKAPPGRSIFVDPREF 399
L + Y+ G +GDWTK+PPG SIFVDPREF
Sbjct: 385 LGEDYSDGSVGDWTKSPPGDSIFVDPREF 413
>AT4G37580.1 | chr4:17658932-17660564 FORWARD LENGTH=404
Length = 403
Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/383 (56%), Positives = 274/383 (71%), Gaps = 20/383 (5%)
Query: 32 GGEAKMCLFTDLLGDPLCRIRNSPAYLMLVAETAXXXXXXXXXXXXXXXXXCVKTVVSGG 91
G K+ LFTDLLGDP+CRIR+SP+YLMLVAE C+KTV G
Sbjct: 26 GPSGKLSLFTDLLGDPICRIRHSPSYLMLVAEMGTEKKEIVGMIRG-----CIKTVTCGQ 80
Query: 92 SVQAGKD-------PIYSKVAYILGLRVSPRYRRKGVGKKLVGRMEEWFRQSGAEYSYMA 144
+ P+Y+K+AY+LGLRVSP +RR+G+G KLV MEEWFRQ+GAEYSY+A
Sbjct: 81 KLDLNHKSQNDVVKPLYTKLAYVLGLRVSPFHRRQGIGFKLVKMMEEWFRQNGAEYSYIA 140
Query: 145 TEQDNEASVRLFTGRCGYSKFRTPSVLVHPVFGHALQPSRNAAIRKLEPREAELLYRWHF 204
TE DN+ASV LFTG+CGYS+FRTPS+LV+PV+ H + SR + KLEP +AE LYR F
Sbjct: 141 TENDNQASVNLFTGKCGYSEFRTPSILVNPVYAHRVNVSRRVTVIKLEPVDAETLYRIRF 200
Query: 205 AAVEFFPADIDAVLSKELSLGTFLAVP-------AGTRWESVEAFMDAPPASWAVMSVWN 257
+ EFFP DID+VL+ +LSLGTF+AVP W F++ PP SWAV+SVWN
Sbjct: 201 STTEFFPRDIDSVLNNKLSLGTFVAVPRGSCYGSGSGSWPGSAKFLEYPPESWAVLSVWN 260
Query: 258 CMDAFRLEVRGAPRLMRAAAVATRLVDRAAPWLKIPSIPNLFAPFGLYFLYGVGGAGPAS 317
C D+F LEVRGA RL R A TR+VD+ P+LK+PSIP++F PFGL+F+YG+GG GP +
Sbjct: 261 CKDSFLLEVRGASRLRRVVAKTTRVVDKTLPFLKLPSIPSVFEPFGLHFMYGIGGEGPRA 320
Query: 318 PRLVRALCRHAHNMARKGGCGVVATEVSACEPVRAGVPHWARLGA-EDLWCIKRLADGYN 376
++V++LC HAHN+A+ GGCGVVA EV+ +P+R G+PHW L EDLWCIKRL D Y+
Sbjct: 321 VKMVKSLCAHAHNLAKAGGCGVVAAEVAGEDPLRRGIPHWKVLSCDEDLWCIKRLGDDYS 380
Query: 377 HGPLGDWTKAPPGRSIFVDPREF 399
G +GDWTK+PPG SIFVDPREF
Sbjct: 381 DGVVGDWTKSPPGVSIFVDPREF 403
>AT5G67430.1 | chr5:26910429-26911856 FORWARD LENGTH=387
Length = 386
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/366 (51%), Positives = 245/366 (66%), Gaps = 18/366 (4%)
Query: 39 LFTDLLGDPLCRIRNSPAYLMLVAETAXXXXXXXXXXXXXXXXXCVKTVVSGGSVQAGKD 98
L DL+GDPL RIR SP++ MLVAE +K V G + D
Sbjct: 34 LLVDLMGDPLARIRQSPSFHMLVAEIGNEIVGMIRG--------TIKMVTRGVNALRQAD 85
Query: 99 PI-----YSKVAYILGLRVSPRYRRKGVGKKLVGRMEEWFRQSGAEYSYMATEQDNEASV 153
+ +K+A++ GLRVSP YRR G+G KLV R+EEWF ++ A YSY+ TE DN ASV
Sbjct: 86 DVSPEINTTKLAFVSGLRVSPFYRRMGIGLKLVQRLEEWFLRNDAVYSYVQTENDNIASV 145
Query: 154 RLFTGRCGYSKFRTPSVLVHPVFGHALQPSRNAAIRKLEPREAELLYRWHFAAVEFFPAD 213
+LFT + GYSKFRTP+ LV+PVF H + SR I KL P +AE LYR F+ EFFP+D
Sbjct: 146 KLFTEKSGYSKFRTPTFLVNPVFNHRVTVSRRVKIIKLAPSDAESLYRNRFSTTEFFPSD 205
Query: 214 IDAVLSKELSLGTFLAVPAGTRWESVEAFMDAPPASWAVMSVWNCMDAFRLEVRGAPRLM 273
I+++L+ +LSLGT+LAVP G ++V + SWAV+S+WN D +RL+V+GA RL
Sbjct: 206 INSILTNKLSLGTYLAVPRGG--DNVSGSLPDQTGSWAVISIWNSKDVYRLQVKGASRLK 263
Query: 274 RAAAVATRLVDRAAPWLKIPSIPNLFAPFGLYFLYGVGGAGPASPRLVRALCRHAHNMAR 333
R A +TR+ D A P+LKIPS PNLF F ++F+YG+GG GP + +V ALC HAHN+AR
Sbjct: 264 RMLAKSTRVFDGAFPFLKIPSFPNLFKSFAMHFMYGIGGEGPRAAEMVEALCSHAHNLAR 323
Query: 334 KGGCGVVATEVSACEPVRAGVPHWARLGAEDLWCIKRLADGYNHGPLGDWTKAPPGRSIF 393
K GC VVA EV++CEP+R G+PHW L EDLWC+KRL Y+ + DWTK+PPG SIF
Sbjct: 324 KSGCAVVAAEVASCEPLRVGIPHWKVLSPEDLWCLKRLR--YDDDGV-DWTKSPPGLSIF 380
Query: 394 VDPREF 399
VDPRE
Sbjct: 381 VDPREI 386
>AT2G30090.1 | chr2:12843583-12845597 REVERSE LENGTH=387
Length = 386
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 157/382 (41%), Positives = 212/382 (55%), Gaps = 48/382 (12%)
Query: 32 GGEAKMCLFTDLLGDPLCRIRNSPAYLMLVAETAXXXXXXXXXXXXXXXXXCVKTVVSGG 91
G + + LFTD LGDP+CRIRNSP ++MLVA G
Sbjct: 37 GHDHQTLLFTDTLGDPICRIRNSPFFIMLVAGVGNKLV---------------------G 75
Query: 92 SVQAGKDPI-----YSKVAYILGLRVSPRYRRKGVGKKLVGRMEEWFRQSGAEYSYMATE 146
S+Q P+ +V Y+LGLRV P YRR+G+G LV ++EEWF A+Y+YMATE
Sbjct: 76 SIQGSVKPVEFHDKSVRVGYVLGLRVVPSYRRRGIGSILVRKLEEWFESHNADYAYMATE 135
Query: 147 QDNEASVRLFTGRCGYSKFRTPSVLVHPVF-GHALQPSRNAAIRKLEPREAELLYRWHFA 205
+DNEAS LF GR GY FR P++LV+PV G L+ + IRKL+ +EAE LYR + A
Sbjct: 136 KDNEASHGLFIGRLGYVVFRNPAILVNPVNPGRGLKLPSDIGIRKLKVKEAESLYRRNVA 195
Query: 206 A-VEFFPADIDAVLSKELSLGTFLAVPAGTRWESVEAFMDAPPASWAVMSVWNCMDAFRL 264
A EFFP DI+ +L +LS+GT++A + +V+ SWA++SVW+ F+L
Sbjct: 196 ATTEFFPDDINKILRNKLSIGTWVAY-----YNNVDN-----TRSWAMLSVWDSSKVFKL 245
Query: 265 EVRGAPRLMRAAAVATRLVDRAAPWLKIPSIPNLFAPFGLYFLYGVGGAGPASPRLVRAL 324
+ AP ++L L + +P+LF PFG YFLYGV GP +LVRAL
Sbjct: 246 RIERAPLSYLLLTKVSKLFGNFLSLLGLTVLPDLFTPFGFYFLYGVHSEGPHCGKLVRAL 305
Query: 325 CRHAHNMARKG---GCGVVATEV----SACEPVRAGVPHWARLGA-EDLWCIKRLADGYN 376
C H HNMA C VV EV + + ++ +PHW L +D+WCIK L N
Sbjct: 306 CEHVHNMAALNDGCACKVVVVEVDKGSNGDDSLQRCIPHWKMLSCDDDMWCIKPLKCEKN 365
Query: 377 HGPLGDWTKAPPGRSIFVDPRE 398
L + +K+ S+FVDPRE
Sbjct: 366 KFDLSERSKSRS--SLFVDPRE 385
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,083,403
Number of extensions: 318685
Number of successful extensions: 567
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 4
Length of query: 399
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 298
Effective length of database: 8,337,553
Effective search space: 2484590794
Effective search space used: 2484590794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)