BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0759000 Os03g0759000|J100082C10
         (84 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39430.1  | chr5:15775302-15777599 REVERSE LENGTH=512          139   3e-34
AT3G29180.1  | chr3:11149073-11151322 FORWARD LENGTH=514          139   3e-34
AT1G13970.1  | chr1:4779742-4781882 REVERSE LENGTH=505            135   4e-33
AT1G59650.1  | chr1:21920099-21922670 FORWARD LENGTH=493          103   2e-23
AT1G10410.1  | chr1:3416842-3419264 REVERSE LENGTH=486             98   7e-22

>AT5G39430.1 | chr5:15775302-15777599 REVERSE LENGTH=512
          Length = 511

 Score =  139 bits (350), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/78 (78%), Positives = 72/78 (92%)

Query: 6   QGPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVLDLGLTIQAQKAEELPEHVLCCMRLN 65
           +GPNYFEIDLDVHRFS++SRKGLEAFR+RLK+G LDLGLTIQAQK EELPE VLCC+RL+
Sbjct: 428 KGPNYFEIDLDVHRFSYLSRKGLEAFRDRLKNGTLDLGLTIQAQKQEELPEKVLCCLRLS 487

Query: 66  KIDFADSGQIPTLIMSSD 83
           KIDF D+GQIPTL++  +
Sbjct: 488 KIDFVDNGQIPTLLIPEE 505



>AT3G29180.1 | chr3:11149073-11151322 FORWARD LENGTH=514
          Length = 513

 Score =  139 bits (350), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/78 (79%), Positives = 70/78 (89%)

Query: 6   QGPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVLDLGLTIQAQKAEELPEHVLCCMRLN 65
           +GPNYFEIDLDVHRFS+ISRKGLEAFR+RLK+G LDLGLTIQAQK EELPE VLCC+RL+
Sbjct: 431 KGPNYFEIDLDVHRFSYISRKGLEAFRDRLKNGTLDLGLTIQAQKPEELPEQVLCCLRLS 490

Query: 66  KIDFADSGQIPTLIMSSD 83
           KIDF D GQIP L++  D
Sbjct: 491 KIDFVDHGQIPMLLIPED 508



>AT1G13970.1 | chr1:4779742-4781882 REVERSE LENGTH=505
          Length = 504

 Score =  135 bits (341), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 70/76 (92%)

Query: 6   QGPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVLDLGLTIQAQKAEELPEHVLCCMRLN 65
           QGPNYFEIDLD+HRFS+ISRKGLE+FR+R+K+G+LDLGLTIQAQ  EELPE VLCC+RLN
Sbjct: 427 QGPNYFEIDLDIHRFSYISRKGLESFRDRIKNGILDLGLTIQAQSPEELPEQVLCCVRLN 486

Query: 66  KIDFADSGQIPTLIMS 81
           KIDF + GQIPTL+ +
Sbjct: 487 KIDFVNHGQIPTLLTN 502



>AT1G59650.1 | chr1:21920099-21922670 FORWARD LENGTH=493
          Length = 492

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 57/69 (82%)

Query: 7   GPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVLDLGLTIQAQKAEELPEHVLCCMRLNK 66
           G NYFEID+D+HRFS+ISRKG EAF +RLK+ VLD+GLTIQ  K EELPE +LCC+RLN 
Sbjct: 417 GENYFEIDIDMHRFSYISRKGFEAFLDRLKNCVLDVGLTIQGNKPEELPEQILCCIRLNG 476

Query: 67  IDFADSGQI 75
           ID+ +  Q+
Sbjct: 477 IDYMNYHQL 485



>AT1G10410.1 | chr1:3416842-3419264 REVERSE LENGTH=486
          Length = 485

 Score = 98.2 bits (243), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 54/69 (78%)

Query: 7   GPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVLDLGLTIQAQKAEELPEHVLCCMRLNK 66
           G NYFEID+D+HRF +ISRKG E F +RLK  VLD+GLTIQ  K EELPE +LCC+RLN 
Sbjct: 412 GDNYFEIDIDMHRFGYISRKGFETFIDRLKICVLDVGLTIQGNKPEELPEQILCCVRLNG 471

Query: 67  IDFADSGQI 75
           IDF +  Q+
Sbjct: 472 IDFMNYHQL 480



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.142    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,702,431
Number of extensions: 56427
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 5
Length of query: 84
Length of database: 11,106,569
Length adjustment: 55
Effective length of query: 29
Effective length of database: 9,598,689
Effective search space: 278361981
Effective search space used: 278361981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)