BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0750900 Os03g0750900|J033060N05
         (219 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17240.1  | chr4:9666799-9668292 REVERSE LENGTH=344            122   2e-28

>AT4G17240.1 | chr4:9666799-9668292 REVERSE LENGTH=344
          Length = 343

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 98/142 (69%), Gaps = 24/142 (16%)

Query: 93  GGK--LPGLSRKLFQKGSSEPKKKALTEVKNGGNTRTLAMVLRSERELLTQSKEQEDEIA 150
           GGK  L  L RKLF K     K KALTEVK+  NTRTL+MVLRSERELL  +K+QE EIA
Sbjct: 100 GGKSTLGTLQRKLFGK----EKVKALTEVKS--NTRTLSMVLRSERELLGMNKDQEVEIA 153

Query: 151 ALRLQLEQKDTEQVERLKDLCLRQREEIRTLKDAVLFPDTQPDR---------------H 195
            L+ QLE+K+ E VE+LKDLCL+QREEI++LK AVLFPD+   +               +
Sbjct: 154 ELKFQLEEKNRE-VEKLKDLCLKQREEIKSLKSAVLFPDSMNSQINQMQELNQAREIIPN 212

Query: 196 LRDEISTLTGQIQCLAEELAQA 217
           L+ ++ +L GQ+QC+A++LA+ 
Sbjct: 213 LQKQVISLNGQLQCIAQDLAEV 234



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,348,217
Number of extensions: 117021
Number of successful extensions: 543
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 124
Effective length of database: 8,502,049
Effective search space: 1054254076
Effective search space used: 1054254076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)