BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0750100 Os03g0750100|J033057I17
         (280 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04130.1  | chr1:1073465-1075374 FORWARD LENGTH=361            148   4e-36

>AT1G04130.1 | chr1:1073465-1075374 FORWARD LENGTH=361
          Length = 360

 Score =  148 bits (373), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/165 (44%), Positives = 102/165 (61%), Gaps = 7/165 (4%)

Query: 1   MALLMDPGAGGPLTESEKADLDXXXXXXXXXXXXXXXXGNRLVKMGRSHYADAVDCYTKA 60
           MAL MD GA  P TE EKADL+                GN  V+ G+ HY++A+DCYTKA
Sbjct: 1   MALWMDAGAT-PTTEKEKADLEAISALKESTAIEFKEEGNECVRKGKKHYSEAIDCYTKA 59

Query: 61  IAQMEXXXXXXXXXXDASVLFANRAHVNLLLGNHRRALDDAARAVQLSPSNVXXXXXXXX 120
           I+Q            + S+LF+NR+HVNLLLGN+RRAL DA  +++LSP NV        
Sbjct: 60  ISQ------GVLSDSETSILFSNRSHVNLLLGNYRRALTDAEESMRLSPHNVKAVYRAAK 113

Query: 121 XXXXLGLLPEAAAFCRRGIEQDPANEELKKLLAQVDAQQSEQDRH 165
               L LL EA ++C +GIE DP+NE++KKLL  V++++ E+++H
Sbjct: 114 ASMSLDLLNEAKSYCEKGIENDPSNEDMKKLLKLVNSKKQEKEQH 158



 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 10/100 (10%)

Query: 182 TVLSKSEILKILLEGTMDSKSLPXXXXXXXXXXXXXXKSSTITSSD-KGSVKWINVKEGK 240
           T L +S +L+ LLEGT  S++                 S+T T S  KGS   + V E +
Sbjct: 269 TPLPRSRVLQYLLEGTKGSQA---------ETTGEEDTSATKTPSYLKGSSGMVKVNERR 319

Query: 241 TLQEVLQHKDFIIPAIPVFFVVSRKSTFYRKFKAGNWSLP 280
           TL +VL+   F+IP IPVF++VS++S FY+ F AG W+ P
Sbjct: 320 TLHDVLKEPKFVIPEIPVFYIVSKRSKFYKDFTAGKWTPP 359



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,095,529
Number of extensions: 112010
Number of successful extensions: 288
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 183
Effective length of database: 8,447,217
Effective search space: 1545840711
Effective search space used: 1545840711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)