BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0748600 Os03g0748600|AK062629
         (171 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G37480.1  | chr5:14884477-14885517 REVERSE LENGTH=157          116   8e-27

>AT5G37480.1 | chr5:14884477-14885517 REVERSE LENGTH=157
          Length = 156

 Score =  116 bits (290), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 83/148 (56%), Gaps = 19/148 (12%)

Query: 25  FLEVKCRSSGEVRRFAFGTTARYALHAVNRKLAPGAPAALHVEAVKDGEEPVSFGPAAPL 84
           FLEV C  SG+  RF  GT A +A+  +NRKL    P  +++EA K+GEEP+SFG  A L
Sbjct: 8   FLEVFCEVSGKDYRFTTGTKAEFAVSVINRKLGSLKPRVIYIEAAKEGEEPISFGDNASL 67

Query: 85  ADYGDGWKLQTITEQDAPGYYQTPASDTRRDDTKQ-----------SAKNPRDQETMAAY 133
            +YG GWKL+T+ + D PG        T +++ +Q           +   P   E    Y
Sbjct: 68  LNYGLGWKLKTVVDADLPG--------TEKNNRQQRFSSVFSTGFANDSTPEIGEQSLKY 119

Query: 134 ITKIVLAFVFIFLLGGLFTYLLETLPDM 161
           I +I  AFV +F+LGGLFT  LE LP +
Sbjct: 120 IGRIFFAFVLMFILGGLFTVALENLPRL 147



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,539,043
Number of extensions: 132740
Number of successful extensions: 260
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 80
Effective length of database: 8,611,713
Effective search space: 688937040
Effective search space used: 688937040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)