BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0748500 Os03g0748500|AY644646
(252 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36750.1 | chr4:17324642-17326215 FORWARD LENGTH=274 208 3e-54
AT4G27270.1 | chr4:13661458-13663243 REVERSE LENGTH=206 191 3e-49
AT5G58800.1 | chr5:23746032-23746895 REVERSE LENGTH=208 182 2e-46
AT5G54500.2 | chr5:22124674-22126435 FORWARD LENGTH=245 138 3e-33
>AT4G36750.1 | chr4:17324642-17326215 FORWARD LENGTH=274
Length = 273
Score = 208 bits (529), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/278 (42%), Positives = 143/278 (51%), Gaps = 35/278 (12%)
Query: 1 MGKGGGCIPSKRHRXXXXXXXXXSHSHQR----------ERTSIXXX------------- 37
MGKGGGC+PSK+ + ++T+I
Sbjct: 1 MGKGGGCVPSKKKKPATTGDGPGIDDDNDATNAPIQIDDDQTTIDGDRTTATNTGGTTTP 60
Query: 38 ------XXXXXXVRIYVVFYSMYGHVRLLARAVARGVGSVPGARAILFRVPETLPPAVLA 91
++I+VVFYSMYGHV LA+ + +GV SV G A L+RVPETL V+
Sbjct: 61 AITTTAAKISSPLKIFVVFYSMYGHVESLAKRMKKGVDSVEGVEATLYRVPETLSQEVVE 120
Query: 92 RMEAXXXXXXXXXXXXXXXXXXXXLPDADGFLFGFPARFGAMPAQMQAFFDSTVPLCRHQ 151
+M+A L ADGFLFGFP R+G M AQM+AFFDST L + Q
Sbjct: 121 QMKAPVKDLEIPEITAAE------LTAADGFLFGFPTRYGCMAAQMKAFFDSTGSLWKEQ 174
Query: 152 RLAGKPAGLFVSXXXXXXXXXXXXXXXITQLAHHGMLFVPIGYTFXXXXXXXXXXXXXSP 211
LAGKPAG FVS ITQL HHGMLFVPIGYTF SP
Sbjct: 175 SLAGKPAGFFVSTGTQGGGQETTAWTAITQLVHHGMLFVPIGYTFGAGMFKMDSIRGGSP 234
Query: 212 YGAGVFSGDGSRPPSELELALAEHHGKYMATLVKKMVH 249
YGAGVF+GDGSR +E ELALAEH G YMA +VK++
Sbjct: 235 YGAGVFAGDGSREATETELALAEHQGNYMAAIVKRLAQ 272
>AT4G27270.1 | chr4:13661458-13663243 REVERSE LENGTH=206
Length = 205
Score = 191 bits (485), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 122/204 (59%), Gaps = 7/204 (3%)
Query: 44 VRIYVVFYSMYGHVRLLARAVARGVGSVPGARAILFRVPETLPPAVLARMEAXXXXXXXX 103
++Y+V+YSMYGHV LA+ + +G SV G AIL++VPETL VL++M A
Sbjct: 3 TKVYIVYYSMYGHVEKLAQEIRKGAASVDGVEAILWQVPETLQEDVLSKMSAPPKSDAPI 62
Query: 104 XXXXXXXXXXXXLPDADGFLFGFPARFGAMPAQMQAFFDSTVPLCRHQRLAGKPAGLFVS 163
L +ADGF+FGFP RFG M AQ +AF D+T L R Q+LAGKPAG+F S
Sbjct: 63 ITPNE-------LAEADGFIFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGIFYS 115
Query: 164 XXXXXXXXXXXXXXXITQLAHHGMLFVPIGYTFXXXXXXXXXXXXXSPYGAGVFSGDGSR 223
ITQL HHGM+FVPIGYTF SPYGAG F+GDGSR
Sbjct: 116 TGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMENVKGGSPYGAGTFAGDGSR 175
Query: 224 PPSELELALAEHHGKYMATLVKKM 247
P+ELEL A H GKY+A + KK+
Sbjct: 176 QPTELELGQAFHQGKYIAAISKKL 199
>AT5G58800.1 | chr5:23746032-23746895 REVERSE LENGTH=208
Length = 207
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 122/204 (59%), Gaps = 6/204 (2%)
Query: 44 VRIYVVFYSMYGHVRLLARAVARGVGSVPGARAILFRVPETLPPAVLARMEAXXXXXXXX 103
+IY+V+YS++GHV +AR V RGV SVP A L++VPETLP +L +++A
Sbjct: 4 TKIYIVYYSLHGHVETMAREVLRGVNSVPDVEATLWQVPETLPEKILEKVKAVPRPDDVP 63
Query: 104 XXXXXXXXXXXXLPDADGFLFGFPARFGAMPAQMQAFFDSTVPLCRHQRLAGKPAGLFVS 163
L +ADGF+FGFP+RFG M +Q+ FFD+T L Q LAGKPAG+F S
Sbjct: 64 DIRPEQ------LAEADGFMFGFPSRFGVMASQVMTFFDNTNDLWTTQALAGKPAGIFWS 117
Query: 164 XXXXXXXXXXXXXXXITQLAHHGMLFVPIGYTFXXXXXXXXXXXXXSPYGAGVFSGDGSR 223
+T+LAHHGM+FVP+GYTF SPYG+G ++ DGSR
Sbjct: 118 TGFHGGGQELTALTAVTKLAHHGMIFVPVGYTFGKSMYEMGEVKGGSPYGSGTYAADGSR 177
Query: 224 PPSELELALAEHHGKYMATLVKKM 247
P+ELE+ A +HGKY A + KK+
Sbjct: 178 EPTELEIQQANYHGKYFAGIAKKL 201
>AT5G54500.2 | chr5:22124674-22126435 FORWARD LENGTH=245
Length = 244
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 88/153 (57%), Gaps = 7/153 (4%)
Query: 44 VRIYVVFYSMYGHVRLLARAVARGVGSVPGARAILFRVPETLPPAVLARMEAXXXXXXXX 103
++Y+V+YSMYGHV LA + +G SV G A L++VPETL L++M A
Sbjct: 3 TKVYIVYYSMYGHVEKLAEEIRKGAASVEGVEAKLWQVPETLHEEALSKMSAPPKSESPI 62
Query: 104 XXXXXXXXXXXXLPDADGFLFGFPARFGAMPAQMQAFFDSTVPLCRHQRLAGKPAGLFVS 163
L +ADGF+FGFP RFG M AQ +AF D+T L R Q LAGKPAG+F S
Sbjct: 63 ITPNE-------LAEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRAQALAGKPAGIFYS 115
Query: 164 XXXXXXXXXXXXXXXITQLAHHGMLFVPIGYTF 196
ITQL HHGMLFVPIGYTF
Sbjct: 116 TGSQGGGQETTALTAITQLVHHGMLFVPIGYTF 148
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.140 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,980,803
Number of extensions: 110057
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 4
Length of query: 252
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 156
Effective length of database: 8,474,633
Effective search space: 1322042748
Effective search space used: 1322042748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)