BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0748300 Os03g0748300|AK068519
         (411 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55370.2  | chr1:20674852-20676071 FORWARD LENGTH=355          209   2e-54

>AT1G55370.2 | chr1:20674852-20676071 FORWARD LENGTH=355
          Length = 354

 Score =  209 bits (531), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 173/335 (51%), Gaps = 43/335 (12%)

Query: 77  NVDYLAAEFAGHGVSFEAVGGSCAVKMELRNGSAAHVLLPGGLVTSYKPAMWHGAPTEVI 136
           +V+YL  EF+GHG +FE +G +C  +++L NGS+A+V+L  G++TSYK  +WHG   E++
Sbjct: 61  DVEYLRREFSGHGATFEDIGETCIARLKLDNGSSANVMLTRGMITSYKVRVWHGGKVELL 120

Query: 137 HTTVAEGLGGRAVIRGGVSLDLRCXXXXXXXXXXMPPWSPSGAWSLRDVRGSPTGSIEVE 196
           HT V +      VIRGGVS   R                    W L+ + G     +++E
Sbjct: 121 HTWVEQ-EEEEVVIRGGVSSAFRSSDSDEI-----------SDWRLQGISGDSKDCVQME 168

Query: 197 LASAAPPEASGVEARCVVTLHPEALATEFTARNXXXXXXXXXXXXXXTHLRVSTPDATYA 256
           L   +  +   +E + +++L    L+ E +  N              ++L VSTP+ATYA
Sbjct: 169 LR-RSDKKIKEIELKQIISLRENTLSIELSMTNKGISPIKLEGCSLVSYLTVSTPEATYA 227

Query: 257 VGLQGSDYRAIDPVLSEFAIVPPDFMXXXXXXXXXXXXXXXKGFDAVLSXXXXXXXXXXX 316
           VGL+GSD+    P L  F +V  +                  GF                
Sbjct: 228 VGLEGSDFVETTPFLPRFGVVQGE------------KEEEKPGFGG-------------- 261

Query: 317 XXXXXXXXYKRMTEEMCRIYSHAPRQFTIIDRGRRNSICVQRRGFEEVYVFSPGSKYQWY 376
                   YK++  EM RIY+ AP+ FT+IDRGRRNS+ V R GFEEVY++SPGS+ + Y
Sbjct: 262 ---EEESNYKQLNREMSRIYTCAPKSFTVIDRGRRNSVVVGREGFEEVYMYSPGSRLESY 318

Query: 377 GKYAYVCVGP-AMLEPIVLSPGATWSGAQYLRNPN 410
            K AYVC+GP ++L PI L  G  W G  +L NPN
Sbjct: 319 TKSAYVCIGPSSLLSPISLESGCVWRGVLHLHNPN 353



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,595,310
Number of extensions: 228396
Number of successful extensions: 345
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 2
Length of query: 411
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 310
Effective length of database: 8,337,553
Effective search space: 2584641430
Effective search space used: 2584641430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)