BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0748200 Os03g0748200|AK106146
(253 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G54390.2 | chr1:20304833-20306943 REVERSE LENGTH=329 279 1e-75
AT3G24010.1 | chr3:8676120-8678186 REVERSE LENGTH=235 108 3e-24
>AT1G54390.2 | chr1:20304833-20306943 REVERSE LENGTH=329
Length = 328
Score = 279 bits (713), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 140/228 (61%), Positives = 178/228 (78%), Gaps = 9/228 (3%)
Query: 1 MAIARTGVYVDDYLEYSSTLAGDLQRILSTMRELDERAHGIMGQTKEQIKYLLGVPSHGF 60
MAIARTGVYVDDYLEY+ST +LQR+L+T+RELDER+ ++ QT++Q KY LG+ S
Sbjct: 1 MAIARTGVYVDDYLEYASTFPAELQRLLNTVRELDERSQSLINQTRQQTKYCLGLASQSS 60
Query: 61 DRSNMD-------DDESASERMKKDIEASQDNALSLCTEKVLLARQAYDLIESHIKRLDE 113
+ N + D+E E+M+K+IE+SQ+NALSLCTEKVLLARQAYDLI+SH+KRLDE
Sbjct: 61 KKGNGNHYNNGGLDEEETIEKMRKEIESSQENALSLCTEKVLLARQAYDLIDSHVKRLDE 120
Query: 114 DLGQFAEDLKQEGKIPPDEPSILPAISAFSRDDKRRPGFSTPQATKKFREREWDRERGMD 173
DL FAEDLKQEGKIPPDEPS+LP + + +KR+ + TPQ KK R+ D +R D
Sbjct: 121 DLNNFAEDLKQEGKIPPDEPSVLPPLPIVPKAEKRKSFYGTPQP-KKIDYRDRDWDRDRD 179
Query: 174 FDLMPPPGSNKKTTAPMDVDQTIDPNEPTYCICHQISYGDMIACDNDN 221
F+LMPPPGSN+K P++ +Q IDPNEPTYC+CHQ+S+GDMIACDN+N
Sbjct: 180 FELMPPPGSNRKDLMPIE-EQPIDPNEPTYCVCHQVSFGDMIACDNEN 226
>AT3G24010.1 | chr3:8676120-8678186 REVERSE LENGTH=235
Length = 234
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 124/242 (51%), Gaps = 20/242 (8%)
Query: 9 YVDDYLEYSSTLAGDLQRILSTMRELDERAHGIMGQTKEQIKYLLGVPSHGFDRSNMDDD 68
+ +++ +LA LQ+ + +R+LD+ Q +++ + + G R+
Sbjct: 3 FAEEFEANLVSLAHVLQKKYALLRDLDKSLQENQRQNEQRCEKEIEDIRRG--RAGNITP 60
Query: 69 ESASERMKKDIEASQDNALSLCTEKVLLARQAYDLIESHIKRLDEDLGQFAEDLKQEGKI 128
++ + ++ Q +++ + EKV LA QAYDL++ H+++LD+ + + E +++E
Sbjct: 61 NTSLTKFSEEALDEQKHSVRIADEKVTLAMQAYDLVDMHVQQLDQYMKKSDEVIRKE--- 117
Query: 129 PPDEPSILPAISAFSRDDKRRPGFSTPQATKKFREREWDRERGMDFDLMPPPGSNKKTTA 188
+ + + + G KK R + S T++
Sbjct: 118 ---KEAAAATLELENNGKAGNAGEGGRGGRKKTR---------LATAASTAAASTGMTSS 165
Query: 189 PMDVDQTIDPNEPTYCICHQISYGDMIACDNDNCEGGEWFHYTCVGLTPETRFKGKWFCP 248
MD+D +DPNEPTYCIC+Q+S+G+M+ACDN+ C+ EWFH+ CVGL + KGKW+CP
Sbjct: 166 NMDLDLPVDPNEPTYCICNQVSFGEMVACDNNACK-IEWFHFGCVGLKEQP--KGKWYCP 222
Query: 249 TC 250
C
Sbjct: 223 EC 224
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,255,682
Number of extensions: 281860
Number of successful extensions: 919
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 913
Number of HSP's successfully gapped: 2
Length of query: 253
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 157
Effective length of database: 8,474,633
Effective search space: 1330517381
Effective search space used: 1330517381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)