BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0744700 Os03g0744700|AK071178
         (276 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G62250.1  | chr1:22995615-22997003 REVERSE LENGTH=268          300   5e-82

>AT1G62250.1 | chr1:22995615-22997003 REVERSE LENGTH=268
          Length = 267

 Score =  300 bits (768), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 150/239 (62%), Positives = 180/239 (75%), Gaps = 4/239 (1%)

Query: 40  YNPVEGHHVQKPHIVPSCKVNFTRASHYLYRSLSERTTRHWL--HRFHVNASSDEDFRSS 97
           + P+    V    IVP   V    +S      +  R  R W+  +  + + SSD+++RSS
Sbjct: 31  FGPLISCSVSPRSIVPCSNVECYHSSFSTKYQIQPR--RRWMFCNSRNNSISSDDEYRSS 88

Query: 98  RNIAISLFKRYKNVIDRGGGDNLKEFVSAGVNAYALGCTEEGLRKELMDIEDSGLEIEAL 157
            NIAISL +RY+ VI RG G+ LKEF+SAGVNAYALGCT+E LRKELM ++DSGLEIE +
Sbjct: 89  PNIAISLLRRYRTVIGRGEGETLKEFISAGVNAYALGCTDEDLRKELMAMKDSGLEIERM 148

Query: 158 RSNGGGTSLTFKVHSFEVRECILWLSIVFITILCTPQPTIIRWSTTPPVSADVLHQWKGF 217
            + GG T    K+   EV ECILWL IVFITILCTPQPT+IRWS+TP VS ++L +W+GF
Sbjct: 149 ENYGGSTQTKSKITLSEVDECILWLRIVFITILCTPQPTVIRWSSTPSVSDEILSKWRGF 208

Query: 218 CALIANAYYTKGMAWLPVKTLQLEQMAVTGSSEEPSVVASRMQLVFSTLEVVSPQWPRV 276
           CA+IANAYY +GMAWLPVKTLQLEQMAVTG SEEPSVVASRM+LVFSTLEVVSPQWPRV
Sbjct: 209 CAVIANAYYIRGMAWLPVKTLQLEQMAVTGQSEEPSVVASRMRLVFSTLEVVSPQWPRV 267



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,350,262
Number of extensions: 270498
Number of successful extensions: 526
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)