BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0742300 Os03g0742300|AK108126
(127 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G04280.1 | chr3:1130138-1130689 REVERSE LENGTH=143 83 5e-17
AT5G26594.1 | chr5:9269282-9270254 FORWARD LENGTH=140 77 2e-15
AT2G01830.2 | chr2:363332-368016 REVERSE LENGTH=1081 73 5e-14
AT2G47430.1 | chr2:19459167-19463122 REVERSE LENGTH=1123 70 3e-13
AT5G10720.1 | chr5:3386835-3390541 FORWARD LENGTH=923 67 3e-12
AT5G35750.1 | chr5:13911743-13916337 REVERSE LENGTH=1177 66 5e-12
AT1G27320.1 | chr1:9487780-9492027 FORWARD LENGTH=1037 63 4e-11
AT2G17820.1 | chr2:7743133-7748013 REVERSE LENGTH=1208 61 2e-10
AT2G01760.1 | chr2:333041-334514 FORWARD LENGTH=383 48 2e-06
AT5G02810.1 | chr5:638283-641461 REVERSE LENGTH=728 47 3e-06
AT2G25180.1 | chr2:10724490-10726961 REVERSE LENGTH=597 46 6e-06
>AT3G04280.1 | chr3:1130138-1130689 REVERSE LENGTH=143
Length = 142
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 73/119 (61%), Gaps = 9/119 (7%)
Query: 3 RKMIRVLLVEDEEINRVVARAALKAAGGGDVVDEAENGEVAVQRVRDAAAPYDLVLMDKQ 62
+K+I VL+V+D+ +NR + +K GG + A+NGE AV RD A +DL+LMDK+
Sbjct: 19 KKLINVLIVDDDPLNRRLHEMIIKTIGG--ISQTAKNGEEAVILHRDGEASFDLILMDKE 76
Query: 63 MPVMDGHEATRRIRGMGVTTPIVAVSSDGLPADVD----AFITAGADDFTSKPLSKEKL 117
MP DG T+++R M VT+ IV V+S AD + AF+ AG + KPL+K K+
Sbjct: 77 MPERDGVSTTKKLREMKVTSMIVGVTS---VADQEEERKAFMEAGLNHCLEKPLTKAKI 132
>AT5G26594.1 | chr5:9269282-9270254 FORWARD LENGTH=140
Length = 139
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 1 MARKMIRVLLVEDEEINRVVARAALKAAG-GGDVVDEAENGEVAVQRVRDAAAPYDLVLM 59
+A + L+V+D +N+ + + L G DVV NG+ AV V + YDL+LM
Sbjct: 13 LAESKLTALVVDDSFVNQTIHQKLLNRLGIKNDVV---TNGKEAVD-VYCSGGNYDLILM 68
Query: 60 DKQMPVMDGHEATRRIRGMGVTTPIVAVSSDGLPADVDAFITAGADDFTSKPLSKEKLGV 119
D MP+M+G +AT+R+R MG+ + I V++ + F+ AG +DF KPL+ KL
Sbjct: 69 DMDMPIMNGIQATKRLREMGIESKIAGVTTRANEGEKKEFMEAGLNDFQEKPLTISKLLS 128
Query: 120 ILAKFRL 126
IL K
Sbjct: 129 ILHKLNF 135
>AT2G01830.2 | chr2:363332-368016 REVERSE LENGTH=1081
Length = 1080
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 7 RVLLVEDEEINRVVARAALKAAGGGDVVDEAENGEVAVQRVRDAAAPYDLVLMDKQMPVM 66
++L+V+D +NR VA ALK G V AE+G+VA+ ++ +D MD QMP M
Sbjct: 946 KILVVDDNIVNRRVAAGALKKFGAEVVC--AESGQVALGLLQ-IPHTFDACFMDIQMPQM 1002
Query: 67 DGHEATRRIRGMGVTT----------PIVAVSSDGLPADVDAFITAGADDFTSKPLSKEK 116
DG EATR+IR M T PI+A+++D + A + + +G D + SKP +E
Sbjct: 1003 DGFEATRQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGYVSKPFEEEN 1062
Query: 117 LGVILAK 123
L +AK
Sbjct: 1063 LYKSVAK 1069
>AT2G47430.1 | chr2:19459167-19463122 REVERSE LENGTH=1123
Length = 1122
Score = 70.1 bits (170), Expect = 3e-13, Method: Composition-based stats.
Identities = 48/124 (38%), Positives = 68/124 (54%), Gaps = 17/124 (13%)
Query: 7 RVLLVEDEEINRVVARAALKAAGGGDVVDEAENGEVAVQRVRDAAA-----------PYD 55
RVL+V+D I+R VA LK G +V ++ ++G+ A++ V + P+D
Sbjct: 987 RVLVVDDNFISRKVATGKLKKMGVSEV-EQCDSGKEALRLVTEGLTQREEQGSVDKLPFD 1045
Query: 56 LVLMDKQMPVMDGHEATRRIRGM----GVTTPIVAVSS-DGLPADVDAFITAGADDFTSK 110
+ MD QMP MDG+EATR IR + GV TPI+AVS D + I AG D F K
Sbjct: 1046 YIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDK 1105
Query: 111 PLSK 114
L++
Sbjct: 1106 SLNQ 1109
>AT5G10720.1 | chr5:3386835-3390541 FORWARD LENGTH=923
Length = 922
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 32/146 (21%)
Query: 7 RVLLVEDEEINRVVARAALKAAGGGDVVDEAENGEVAVQRVRDAAAPYDLVLMDKQMPVM 66
++LLVED +IN +VA++ +K G +D A NG A+ + ++ YDLVLMD MPV+
Sbjct: 779 KILLVEDNKINIMVAKSMMKQLG--HTMDIANNGVEAITAINSSS--YDLVLMDVCMPVL 834
Query: 67 DGHEATRRIR--------------GMGVTT--------------PIVAVSSDGLPADVDA 98
DG +ATR IR G+ ++T PI+A++++ L +
Sbjct: 835 DGLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEE 894
Query: 99 FITAGADDFTSKPLSKEKLGVILAKF 124
G D F SKP++ +KL L ++
Sbjct: 895 CYANGMDSFISKPVTLQKLRECLQQY 920
>AT5G35750.1 | chr5:13911743-13916337 REVERSE LENGTH=1177
Length = 1176
Score = 65.9 bits (159), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 25/140 (17%)
Query: 7 RVLLVEDEEINRVVARAALKAAGGGDVVDEAENGEVAVQRVRDAAAPYDLVLMDKQMPVM 66
++L+V+D +NR VA ALK G +V E+G+ A+ ++ +D MD QMP M
Sbjct: 1036 QILVVDDNLVNRRVAEGALKKYGA--IVTCVESGKAALAMLK-PPHNFDACFMDLQMPEM 1092
Query: 67 DGHEATRRIRGM----------------------GVTTPIVAVSSDGLPADVDAFITAGA 104
DG EATRR+R + PI+A+++D + A + + G
Sbjct: 1093 DGFEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQATHEECMKCGM 1152
Query: 105 DDFTSKPLSKEKLGVILAKF 124
D + SKP +E L +A+F
Sbjct: 1153 DGYVSKPFEEEVLYTAVARF 1172
>AT1G27320.1 | chr1:9487780-9492027 FORWARD LENGTH=1037
Length = 1036
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 25/140 (17%)
Query: 7 RVLLVEDEEINRVVARAALKAAGGGDVVDEAENGEVAVQRVRDAAAPYDLVLMDKQMPVM 66
++L+V+D +N VA ALK G DVV AE+G A+ ++ +D MD QMP M
Sbjct: 891 KILIVDDNNVNLRVAAGALKKYGA-DVVC-AESGIKAISLLK-PPHEFDACFMDIQMPEM 947
Query: 67 DGHEATRRIRGM------------------GVTT----PIVAVSSDGLPADVDAFITAGA 104
DG EATRRIR M G T P++A+++D + A + + G
Sbjct: 948 DGFEATRRIRDMEEEMNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQATHEECLKCGM 1007
Query: 105 DDFTSKPLSKEKLGVILAKF 124
D + SKP E+L +++F
Sbjct: 1008 DGYVSKPFEAEQLYREVSRF 1027
>AT2G17820.1 | chr2:7743133-7748013 REVERSE LENGTH=1208
Length = 1207
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 33/143 (23%)
Query: 6 IRVLLVEDEEINRVVARAALKAAG--------GGDVVD---------------------E 36
IR+LL ED + + VA L+ G G VD E
Sbjct: 1044 IRILLAEDTPVLQRVATIMLEKMGATVTAVWDGQQAVDSLNYKSINAQAPTEEHKSFEEE 1103
Query: 37 AENGEVAVQRVRDAAAPYDLVLMDKQMPVMDGHEATRRIR----GMGVTTPIVAVSSDGL 92
N + ++PYDL+LMD QMP MDG+EAT+ IR G + PIVA+++ +
Sbjct: 1104 TANKVTTRETSLRNSSPYDLILMDCQMPKMDGYEATKAIRRAEIGTELHIPIVALTAHAM 1163
Query: 93 PADVDAFITAGADDFTSKPLSKE 115
+D + G D + +KP+ ++
Sbjct: 1164 SSDEAKCLEVGMDAYLTKPIDRK 1186
>AT2G01760.1 | chr2:333041-334514 FORWARD LENGTH=383
Length = 382
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 40 GEVAVQRVRDAAAPYDLVLMDKQMPVMDGHEATRRIRGMGVTTPIVAVSSDGLPADVDAF 99
+VA+ +R+ +DLVL D MP M+G+ +++ + + P++ +S DG V
Sbjct: 43 ADVALTILRERKDSFDLVLSDVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTG 102
Query: 100 ITAGADDFTSKPLSKEKL 117
I GA D+ KP+ E+L
Sbjct: 103 INHGACDYLIKPIRPEEL 120
>AT5G02810.1 | chr5:638283-641461 REVERSE LENGTH=728
Length = 727
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 18/126 (14%)
Query: 4 KMIRVLLVEDEEINRVVARAALKAAGGGDVVDEAENGEVAVQRVRDAAAPYDLVLMDKQM 63
+ IRVLLVE+++ R + A L+ +VV EA NG A + + D D+VL + M
Sbjct: 76 RTIRVLLVENDDCTRYIVTALLRNCSY-EVV-EASNGIQAWKVLEDLNNHIDIVLTEVIM 133
Query: 64 PVMDG---------HEATRRIRGMGVTTPIVAVSSDGLPADVDAFITAGADDFTSKPLSK 114
P + G H++ R I P++ +SS V ++ GA DF KP+ K
Sbjct: 134 PYLSGIGLLCKILNHKSRRNI-------PVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRK 186
Query: 115 EKLGVI 120
+L ++
Sbjct: 187 NELKIL 192
>AT2G25180.1 | chr2:10724490-10726961 REVERSE LENGTH=597
Length = 596
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 6 IRVLLVEDEEINRVVARAALKAAGGGDVVDEAENGEVAVQRVRDAAAPYDLVLMDKQMPV 65
+RVL V+D++ + + L+ V + A++ +R+ +DLV+ D MP
Sbjct: 17 MRVLAVDDDQTCLKILESLLRHCQYH--VTTTNQAQKALELLRENKNKFDLVISDVDMPD 74
Query: 66 MDGHEATRRIRGMGVTTPIVAVSSDGLPADVDAFITAGADDFTSKPLSKEKL 117
MDG + + G+ + P++ +S+ P V +T GA D+ KP+ E+L
Sbjct: 75 MDGFKLLELV-GLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEEL 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,509,843
Number of extensions: 93740
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 13
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)