BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0740600 Os03g0740600|AK101589
         (375 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05920.1  | chr5:1777781-1779699 REVERSE LENGTH=369            552   e-157

>AT5G05920.1 | chr5:1777781-1779699 REVERSE LENGTH=369
          Length = 368

 Score =  552 bits (1422), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 265/361 (73%), Positives = 302/361 (83%), Gaps = 4/361 (1%)

Query: 9   VRDMDALEGVRSIVLKPSESLDEGRFTRIAGADFNDXXXXXXXXXXXXXTTGFQASNLGD 68
           + D      V S V K SESL EG+  +I G DFN              TTGFQASNLG+
Sbjct: 1   MEDDRVFSSVHSTVFKESESL-EGKCDKIEGYDFNQGVDYPKLMRSML-TTGFQASNLGE 58

Query: 69  AVDVVNQMLDWRLSHEKP-REDCDEAELDPTYRESVKCKIFLGFTSNLVSSGIRDVVRFL 127
           A+DVVNQMLDWRL+ E    EDC E E +P++RESVKCKIFLGFTSNLVSSG+RD +R+L
Sbjct: 59  AIDVVNQMLDWRLADETTVAEDCSEEEKNPSFRESVKCKIFLGFTSNLVSSGVRDTIRYL 118

Query: 128 VQHHMVDVIVTTAGGIEEDLIKCLAPTYRGEFSLPGTLLRSKGLNRIGNLLVPNDNYCKF 187
           VQHHMVDVIVTT GG+EEDLIKCLAPT++G+FSLPG  LRSKGLNRIGNLLVPNDNYCKF
Sbjct: 119 VQHHMVDVIVTTTGGVEEDLIKCLAPTFKGDFSLPGAYLRSKGLNRIGNLLVPNDNYCKF 178

Query: 188 ENWIMPLFDQMLQEQSTENV-WTPSKVIACLGKEINDESSYLYWAYKNNIPVYCPALTDG 246
           E+WI+P+FD+ML+EQ  ENV WTPSK++A LGKEIN+ESSYLYWAYK NIPV+CP LTDG
Sbjct: 179 EDWIIPIFDEMLKEQKEENVLWTPSKLLARLGKEINNESSYLYWAYKMNIPVFCPGLTDG 238

Query: 247 SLGDMLFCHAVRNPGLIIDIVQDIRLMNGEAIHATPRKTGIIVLGGGLPKHHICNANMFR 306
           SLGDML+ H+ R  GLIID+VQDIR MNGEA+HA P+KTG+I+LGGGLPKHHICNANM R
Sbjct: 239 SLGDMLYFHSFRTSGLIIDVVQDIRAMNGEAVHANPKKTGMIILGGGLPKHHICNANMMR 298

Query: 307 NGADYAVYINTAQEFDGSDSGAQPDEAVSWGKIKGSAKPVKVHCDATIAFPLIVAATFAR 366
           NGADYAV+INT QEFDGSDSGA+PDEAVSWGKI+GSAK VKV+CDATIAFPL+VA TFA 
Sbjct: 299 NGADYAVFINTGQEFDGSDSGARPDEAVSWGKIRGSAKTVKVYCDATIAFPLLVAETFAT 358

Query: 367 K 367
           K
Sbjct: 359 K 359



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,419,165
Number of extensions: 363104
Number of successful extensions: 690
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 688
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 275
Effective length of database: 8,364,969
Effective search space: 2300366475
Effective search space used: 2300366475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)