BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0739700 Os03g0739700|AK062272
         (344 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19390.1  | chr4:10574903-10576355 REVERSE LENGTH=274          123   1e-28
AT5G13720.1  | chr5:4427960-4429029 FORWARD LENGTH=263            104   5e-23

>AT4G19390.1 | chr4:10574903-10576355 REVERSE LENGTH=274
          Length = 273

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 111/179 (62%), Gaps = 10/179 (5%)

Query: 153 EATIHQGVVRCQSFTLIGVAGSLVGSVPCFLEGCGAVVRSFFVQFRALTQTIDQAEIIKL 212
           E  I + +  C+  T +G  GSL+GSV CF++GC  VV SF      L  ++++ ++I L
Sbjct: 98  EEGIEKVIYSCRFMTFLGTLGSLLGSVLCFIKGCMYVVDSF------LQYSVNRGKVIFL 151

Query: 213 LIEAIDMFLIGTALLTFGMGMYIMFYG----SRSIQNPGMQGDNSHLGSFNLKKLKEGAR 268
           L+EAID++L+GT +L FG+G+Y +F      S S  +  +   +S  G F LK+  +   
Sbjct: 152 LVEAIDIYLLGTVMLVFGLGLYELFISNLDTSESRTHDIVSNRSSLFGMFTLKERPQWLE 211

Query: 269 IQSITQAKTRIGHAILLLLQAGVLEKFKSVPLVTGIDMACFAGAVLASSAGVFLLSKLS 327
           ++S+++ KT++GH I++LL  G+ +K K V + +  D+ C + ++  SSA +FLLS+L+
Sbjct: 212 VKSVSELKTKLGHVIVMLLLIGLFDKSKRVVITSVTDLLCISVSIFFSSACLFLLSRLN 270



>AT5G13720.1 | chr5:4427960-4429029 FORWARD LENGTH=263
          Length = 262

 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 103/180 (57%), Gaps = 6/180 (3%)

Query: 152 AEATIHQGVVRCQSFTLIGVAGSLVGSVPCFLEGCGAVVRSFFVQFRALTQTIDQAEIIK 211
            E+ + + +   +   L+ V GSL GS+ CFL GC  +V ++ V +   ++ I   +++ 
Sbjct: 79  TESNVERIIFDFRFLALLAVGGSLAGSLLCFLNGCVYIVEAYKVYWTNCSKGIHTGQMVL 138

Query: 212 LLIEAIDMFLIGTALLTFGMGMYIMFYGSRSIQNPGMQGD-----NSHLGSFNLKKLKEG 266
            L+EAID++L GT +L F MG+Y +F  S S  +   + D     +S  G F +K+  + 
Sbjct: 139 RLVEAIDVYLAGTVMLIFSMGLYGLFI-SHSPHDVPPESDRALRSSSLFGMFAMKERPKW 197

Query: 267 ARIQSITQAKTRIGHAILLLLQAGVLEKFKSVPLVTGIDMACFAGAVLASSAGVFLLSKL 326
            +I S+ + KT++GH I+++L   + E+ K V + TG+D+  ++  +  SSA +++L  L
Sbjct: 198 MKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCIFLSSASLYILHNL 257



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,489,766
Number of extensions: 202947
Number of successful extensions: 575
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 245
Effective length of database: 8,392,385
Effective search space: 2056134325
Effective search space used: 2056134325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)