BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0737800 Os03g0737800|AK103066
(759 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02030.2 | chr4:892262-897175 FORWARD LENGTH=806 796 0.0
AT1G76850.1 | chr1:28848013-28854282 FORWARD LENGTH=1091 57 5e-08
AT1G21170.1 | chr1:7413050-7419411 FORWARD LENGTH=1091 56 6e-08
>AT4G02030.2 | chr4:892262-897175 FORWARD LENGTH=806
Length = 805
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/763 (53%), Positives = 518/763 (67%), Gaps = 55/763 (7%)
Query: 49 LDTINSASFDPDVYMNVLV-------------------------QQSNLEALLQRHVKMA 83
D INS SFD D YM++++ ++SNLE LLQRHV+MA
Sbjct: 40 FDNINSTSFDADQYMDLMIRLFDLGLSDLPAMVDSSELNWVYEIKKSNLEVLLQRHVQMA 99
Query: 84 AEIKNLDTDLQMLVYENYNKFISATDTIKRMKTNIVGMEANMEQLLSKITSVQSRSDTVN 143
AEIKNLDTDLQMLVYENYNKFISATDTIKRMK+NI GME NM+QLL KI SVQS+SD VN
Sbjct: 100 AEIKNLDTDLQMLVYENYNKFISATDTIKRMKSNIFGMEGNMDQLLQKIMSVQSKSDGVN 159
Query: 144 TSLFDKRENIEKLHRTRNLLRKVQFIYDLPTRLNKCIKTEAYADAVRFFTGAKPIFEAYG 203
TSLF+KRE+IEKLHRTRNLLRKVQFIYDLP RL KCIK+EAY DAVRF+TGA PI + YG
Sbjct: 160 TSLFEKREHIEKLHRTRNLLRKVQFIYDLPARLQKCIKSEAYGDAVRFYTGAMPILKVYG 219
Query: 204 DTSFHDCKKASEEAIDLVTQHLKTKLYSDSEPIESRAEAVVLLKQLNFPVDSLKSNLLEK 263
DTSF DC++ASEEAI+++ ++L+TKL+SDSE I++RAEA VLLKQL+ PVDSLK+ LLEK
Sbjct: 220 DTSFQDCRRASEEAIEIIIKNLQTKLFSDSESIQARAEAAVLLKQLDVPVDSLKAKLLEK 279
Query: 264 LEDCLLNFQKEPTQAS--------------------------IGDISKTFRAYLIIFPDS 297
LE L Q +P +AS + S+ RAY IFPDS
Sbjct: 280 LEQSLDGLQIKPEEASTLVEDDDSSNDTESNDQHPAKIHEDAVRGFSEAIRAYREIFPDS 339
Query: 298 EKRLIELAQALFSNRYETVRENLRKRIPSTYLLAMLRSLWEDATAIDEVIPEAALPAFSL 357
E+RL +LA+AL + +E + ++KR+ + L + R +WED +DEV+PEAAL S
Sbjct: 340 EERLFKLARALTAMHFEYMELYIKKRVSAADFLGIFRIVWEDVVLMDEVLPEAALSDLSA 399
Query: 358 ETTRDIIRQHIATAFLHLQSEISDVLARTPSTSNGKLEESQLQTAMETSKVKVLQGCIDL 417
E + ++Q +A F HLQ +ISD L + +E L+ +E S+ VLQG ++
Sbjct: 400 EAAQVTLKQFVARMFSHLQQDISDTLLKFDINQKEAVEGELLKVVLEASQKAVLQGTTNI 459
Query: 418 LQEFHHLIDGNTELLVKLRDLVIDWVQEGFQDFFQKLDGHFHMLSGRSKSPSQEMESVQI 477
Q+F L+D T + +K++DL+ W+Q+G QDFF+ L+ F +LSG++ S S ++E
Sbjct: 460 FQDFRQLLDEKTGIFIKMKDLISGWIQKGSQDFFRSLEAQFLVLSGKT-SSSNDIEGKSS 518
Query: 478 DKVPTALVLMLAQLCVFIEQTAIPKVTEELASSFSGGGARSYEYGPPFVPGEICRLYRSS 537
DK+ L+L+LAQL VFIEQ IP+VTEE+A+SFSGG ++++E GP F+PGE+CR++ ++
Sbjct: 519 DKIHAGLILVLAQLSVFIEQKVIPRVTEEIAASFSGGNSQAFENGPAFIPGELCRVFHAA 578
Query: 538 GEKFLHHYINMKTQKISKLLNKRFTTPVWIKHKEPREVNMFVDLLLLEFNGVVSEVKQVL 597
EK L HYI+ +TQK+S LL KRF TP W+KHKEPREV+M+VD+ L E V EVKQVL
Sbjct: 579 SEKLLQHYIDTRTQKVSVLLRKRFKTPNWVKHKEPREVHMYVDMFLHELEEVGKEVKQVL 638
Query: 598 P-GLIXXXXXXXX--XXXXXXXXXNPMREDMLNRSNTHRARSQFLENHLAKLFEQKMEIF 654
P G N + D + RSN+ RARSQ E HLAKLF+QK+EIF
Sbjct: 639 PQGTFRKHKRTDSNGSNTTTSSRSNTLHNDKMARSNSQRARSQLFETHLAKLFKQKVEIF 698
Query: 655 TKVEYTQESVISAVLKLCLKSLQEFVRLQTFNRSGFQQIQLDMEFLKTSLKEFVDDEAAI 714
TKVE+TQESV++ +KLCLKSLQE+VRLQTFNRSGFQQIQLD++FLK LKE V+DEAAI
Sbjct: 699 TKVEFTQESVVTTTVKLCLKSLQEYVRLQTFNRSGFQQIQLDIQFLKAPLKEAVEDEAAI 758
Query: 715 SFLLKEVNNAAHERCXXXXXXXXXXXXXXXSAKLAKIKEQSPN 757
FLL EV AA ERC AKLAK KE + N
Sbjct: 759 DFLLDEVIVAASERCLDVIPLEPPILDKLIQAKLAKSKEHNNN 801
>AT1G76850.1 | chr1:28848013-28854282 FORWARD LENGTH=1091
Length = 1090
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 54 SASFDPDVYMNVLVQQSNLEALLQRHVKMAAEIKNLDTDLQMLVYENYNKFISATDTIKR 113
S FDP ++++ + Q + L + + +++K + + LV +N++ F+S TI
Sbjct: 229 SDHFDPKLFLSRIHQDTTAADLEAGALGLKSDLKGRNLQRKQLVKDNFDCFVSCKTTIDD 288
Query: 114 MKTNIVGMEANME-----QLLSKITSVQSRSDTVNTSLFDKRENIEKLHRTRNLLRKVQF 168
+++ + +E + E L + + SV SR++ LF+++ EK+ + +L++ +
Sbjct: 289 IESKLKRIEEDPEGSGTTHLFNCMKSVTSRANLAFEPLFERQAQAEKIRSVQGMLQRFRT 348
Query: 169 IYDLPTRLNKCIKTEAYADAVRFFTGAKPI 198
+++LP+ + I Y AVR + AK I
Sbjct: 349 LFNLPSIIRSSISKGEYDLAVREYKKAKSI 378
>AT1G21170.1 | chr1:7413050-7419411 FORWARD LENGTH=1091
Length = 1090
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
Query: 54 SASFDPDVYMNVLVQQSNLEALLQRHVKMAAEIKNLDTDLQMLVYENYNKFISATDTIKR 113
S FDP ++++ + Q+++ L + + +++K + + LV +N++ F+S TI
Sbjct: 228 SDHFDPKLFISRIHQETSAADLESGALALKSDLKGRNLQRKQLVKDNFDCFVSCKTTIDD 287
Query: 114 MKTNIVGME-----ANMEQLLSKITSVQSRSDTVNTSLFDKRENIEKLHRTRNLLRKVQF 168
+++ + +E + L + + SV SR++ LF+++ EK+ + +L++ +
Sbjct: 288 IESKLKRIEDDPDGSGTTHLFNCMKSVTSRANRAFEPLFERQAQAEKIRSVQGMLQRFRT 347
Query: 169 IYDLPTRLNKCIKTEAYADAVRFFTGAKPI 198
+++LP+ + I Y AVR + AK I
Sbjct: 348 LFNLPSIIRSSISKGEYDLAVREYKKAKSI 377
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,295,204
Number of extensions: 519779
Number of successful extensions: 1698
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1692
Number of HSP's successfully gapped: 3
Length of query: 759
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 653
Effective length of database: 8,200,473
Effective search space: 5354908869
Effective search space used: 5354908869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)