BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0734300 Os03g0734300|AK105387
         (82 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72060.1  | chr1:27118494-27118843 FORWARD LENGTH=82            52   6e-08

>AT1G72060.1 | chr1:27118494-27118843 FORWARD LENGTH=82
          Length = 81

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 2/49 (4%)

Query: 34 CPQFCYDGLEYMTCPSTGSQHLKPACNCCIAGEKGCVLYLNNGQVINCT 82
          CP +C   +EYMTCPS+G+  L P CNCC+A  K C L+L++   I+C+
Sbjct: 34 CPLYCLQ-VEYMTCPSSGADKLPPRCNCCLA-PKNCTLHLSDSTTIHCS 80



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,571,351
Number of extensions: 52964
Number of successful extensions: 85
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)