BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0733800 Os03g0733800|J075054A06
         (178 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72280.1  | chr1:27212039-27214506 REVERSE LENGTH=470          272   9e-74
AT2G38960.3  | chr2:16265455-16268150 FORWARD LENGTH=480          262   6e-71

>AT1G72280.1 | chr1:27212039-27214506 REVERSE LENGTH=470
          Length = 469

 Score =  272 bits (695), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 131/176 (74%), Positives = 155/176 (88%), Gaps = 1/176 (0%)

Query: 1   ERVQNLYFTYLFVLRAVTKAADYLEQAEYNTGNPEEDLKTQSLVKQLLYNPKLRSACPLP 60
           +RV+N+YFTYLFVLRAVTKA  YLEQAEY+TGN  EDLKTQSL+KQLLY+PKL++ACP+P
Sbjct: 281 DRVRNMYFTYLFVLRAVTKATAYLEQAEYDTGNHAEDLKTQSLIKQLLYSPKLQTACPVP 340

Query: 61  FDEAKLWQGENGPELKQEIQKQFRNISAIMDCVGCEKCRLWGKLQVLGLGTALKILFSVD 120
           FDEAKLWQG++GPELKQ+IQKQFRNISA+MDCVGCEKCRLWGKLQV GLGTALKILFSV 
Sbjct: 341 FDEAKLWQGQSGPELKQQIQKQFRNISALMDCVGCEKCRLWGKLQVQGLGTALKILFSVG 400

Query: 121 GENHLNQSLQLQRNEVIALVNLLNRLSESVNFVHEKGPSIEDVIKQQ-SSSTVKPV 175
            ++  +Q+LQLQRNEVIALVNLLNRLSESV  VH+  P +E +++ Q +  + KP 
Sbjct: 401 NQDIGDQTLQLQRNEVIALVNLLNRLSESVKMVHDMSPDVERLMEDQIAKVSAKPA 456



>AT2G38960.3 | chr2:16265455-16268150 FORWARD LENGTH=480
          Length = 479

 Score =  262 bits (670), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 122/170 (71%), Positives = 151/170 (88%)

Query: 1   ERVQNLYFTYLFVLRAVTKAADYLEQAEYNTGNPEEDLKTQSLVKQLLYNPKLRSACPLP 60
           +RVQNLYFT+LFVLRAVTKA DYL +AEY TGN  EDLKT+SLVKQ++ +PK ++ACP+P
Sbjct: 280 DRVQNLYFTFLFVLRAVTKAEDYLGEAEYETGNVIEDLKTKSLVKQVVSDPKTKAACPVP 339

Query: 61  FDEAKLWQGENGPELKQEIQKQFRNISAIMDCVGCEKCRLWGKLQVLGLGTALKILFSVD 120
           FDEAKLW+G+ GPELKQ+++KQFRNISAIMDCVGCEKCRLWGKLQ+LGLGTALKILF+V+
Sbjct: 340 FDEAKLWKGQRGPELKQQLEKQFRNISAIMDCVGCEKCRLWGKLQILGLGTALKILFTVN 399

Query: 121 GENHLNQSLQLQRNEVIALVNLLNRLSESVNFVHEKGPSIEDVIKQQSSS 170
           GE++L  +L+LQRNEVIAL+NLL+RLSESV +VH+  P+ E +    +SS
Sbjct: 400 GEDNLRHNLELQRNEVIALMNLLHRLSESVKYVHDMSPAAERIAGGHASS 449



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,714,155
Number of extensions: 141387
Number of successful extensions: 427
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 86
Effective length of database: 8,584,297
Effective search space: 738249542
Effective search space used: 738249542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)