BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0732200 Os03g0732200|Os03g0732200
(104 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10290.1 | chr1:3370774-3377120 FORWARD LENGTH=915 97 1e-21
AT1G59610.1 | chr1:21893413-21900780 FORWARD LENGTH=921 96 4e-21
>AT1G10290.1 | chr1:3370774-3377120 FORWARD LENGTH=915
Length = 914
Score = 97.1 bits (240), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 57/64 (89%)
Query: 1 MEAVEELTQLSESMRQVASLLADDDPCDDSTPRRLSTFVNAVALGNVGAGKMAVLNSLIG 60
MEA++EL+QLS+SM+Q ASLLAD+DP + S+ +R +TF+N VALGNVGAGK AVLNSLIG
Sbjct: 1 MEAIDELSQLSDSMKQAASLLADEDPDETSSSKRPATFLNVVALGNVGAGKSAVLNSLIG 60
Query: 61 HPML 64
HP+L
Sbjct: 61 HPVL 64
>AT1G59610.1 | chr1:21893413-21900780 FORWARD LENGTH=921
Length = 920
Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 56/64 (87%)
Query: 1 MEAVEELTQLSESMRQVASLLADDDPCDDSTPRRLSTFVNAVALGNVGAGKMAVLNSLIG 60
MEA++EL+QLS+SMRQ ASLLAD+DP + S+ RR +T +N VALGNVGAGK AVLNSLIG
Sbjct: 1 MEAIDELSQLSDSMRQAASLLADEDPDETSSSRRPATSLNVVALGNVGAGKSAVLNSLIG 60
Query: 61 HPML 64
HP+L
Sbjct: 61 HPVL 64
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.124 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,897,096
Number of extensions: 64881
Number of successful extensions: 278
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)