BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0731500 Os03g0731500|AK099947
         (845 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42620.2  | chr5:17066630-17071766 FORWARD LENGTH=890         1264   0.0  

>AT5G42620.2 | chr5:17066630-17071766 FORWARD LENGTH=890
          Length = 889

 Score = 1264 bits (3270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/831 (73%), Positives = 682/831 (82%), Gaps = 8/831 (0%)

Query: 16  LRLASVQIILILFLTQGACSSSRDGKTSPPQGLDAGEKDIYLSHSCIHDEILHQRRRAWR 75
           LR     + LIL L   + + +R       +    G +    SHSCIHD+I+ QR+R  R
Sbjct: 15  LRFVISWVSLILLLLGASDAKARHHHHHHQRIAVEGVESGVASHSCIHDQIIEQRKRPGR 74

Query: 76  KEYSVMPQVYHERR--ENMERLRGRHLLGVSSWHASQKNVKKPIRIYLNYDAVGHSPDRD 133
           K YSV PQVYHE R  E      GR LL V      +K+VK+PIRIYLNYDAVGHS DRD
Sbjct: 75  KVYSVTPQVYHEPRSVEKAFHHNGRVLLSVFD---EEKDVKQPIRIYLNYDAVGHSLDRD 131

Query: 134 CKTVGDIVKLGEPPVPSIPGTPVCDPHGDPPLVGDCWYNCTVEDIAGEDKKQRLRKALGQ 193
           C+ VG+IVKLGEPP  + P  P C+P+  PP+ GDCWYNCT++DI+G+DKK RLRKAL Q
Sbjct: 132 CQRVGNIVKLGEPPSSTFPAVPACNPNTKPPVSGDCWYNCTLDDISGKDKKHRLRKALEQ 191

Query: 194 TVEWFRKALAVEPVKGNLRLSGYSACGQDGGVQLPHAYIEDGVANADLVLLVTTRPTTGN 253
           T +WFR+ALAVEPVKGNLRLSGYSACGQDGGVQLP  Y+E+G+A+ DLVLLVTTRPTTGN
Sbjct: 192 TADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPREYVEEGIADTDLVLLVTTRPTTGN 251

Query: 254 TLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFTHFRD 313
           TLAWAVACERDQWGRAIAGHVNVAPRHLT+E+ TLLSATLIHEVMHVLGFDPHAF HFRD
Sbjct: 252 TLAWAVACERDQWGRAIAGHVNVAPRHLTSESGTLLSATLIHEVMHVLGFDPHAFAHFRD 311

Query: 314 ERKRRRSQVTSQILDEKLGRMVTRVVLPRVVMHSRHHYGAFSQNFTGLELEDGGGRGTSG 373
           ERKRRR++VT Q +DEKLGR+VTRVVLPRVVMHSRHHYGAFSQNF+GLELEDGGGRGTSG
Sbjct: 312 ERKRRRTEVTEQQMDEKLGRLVTRVVLPRVVMHSRHHYGAFSQNFSGLELEDGGGRGTSG 371

Query: 374 SHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYQANYSMAEHLDWGRNQGTEFVIS 433
           SHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWY+ANYSMA+ LDWGRNQGT+FV S
Sbjct: 372 SHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYKANYSMADRLDWGRNQGTQFVTS 431

Query: 434 PCNLWKGAYRCNTTQLSGCTYNREAEGYCPIVSYSGDLPKWAQYFPQANKGGQSSLADYC 493
           PCN+WKGAY CNTTQLSGCTYNREAEGYCPI+SY+G+LP+WA+YFPQ NKGGQSSLADYC
Sbjct: 432 PCNMWKGAYHCNTTQLSGCTYNREAEGYCPILSYNGELPQWARYFPQPNKGGQSSLADYC 491

Query: 494 TYYVAYSDGSCTDVNSARAPDRMLGEVRGSNSRCMASTLVRTGFVRGSMTQGNGCYQHRC 553
           TY+VAYSDGSCTD+NSARAPDRMLGEVRGS SRCMAS+LVRTGFVRGSMTQGNGCYQHRC
Sbjct: 492 TYFVAYSDGSCTDINSARAPDRMLGEVRGSESRCMASSLVRTGFVRGSMTQGNGCYQHRC 551

Query: 554 TNNSLEVAVDGIWKSCPQTGGPVQFPGFNGELICPAYHELCNTVPVPVSGQCPKSCSFNG 613
            NN LEVAV+G+WK CPQ GGP++FPGFNGELICPAYHELC+T  V V GQCP SC+FNG
Sbjct: 552 RNNLLEVAVEGVWKFCPQAGGPIRFPGFNGELICPAYHELCSTSVVSVLGQCPNSCNFNG 611

Query: 614 DCIDGTCHCFPGFHGHDCSRRSCPAKCTGHGICKANGICECESGWTGIDCSTAVCDEQCS 673
           DC+DG C C  G+HGHDC  RSCP  C GHG C   G+C CE+G+TGIDCSTA+CDEQCS
Sbjct: 612 DCVDGKCRCLLGYHGHDCRNRSCPNNCNGHGKCTTQGVCICENGFTGIDCSTAICDEQCS 671

Query: 674 LHGGVCDNGKCEFRCSDYAGYTCQKGSAILPSLSMCHDVLVRDADGQHCAPSELSILQQL 733
           LHGGVCDNG CEFRCSDYAGYTCQ  S ++ SL +C DVL +D  GQHCAP E SILQQL
Sbjct: 672 LHGGVCDNGVCEFRCSDYAGYTCQNSSKLVTSLLVCKDVLEKDMSGQHCAPREPSILQQL 731

Query: 734 EAVVLVPNYNRLMPSG-RTFLXXXXXXXXXXXXKRLACWISIQRCDEDGDNRLRVCYSAC 792
           E VV++PNYNRL P G R               KRLACWISIQ+CD DGD+RLRVC+SAC
Sbjct: 732 EEVVVMPNYNRLFPGGARKLFNIFGNSYCDEAAKRLACWISIQKCDIDGDDRLRVCHSAC 791

Query: 793 ELYNTACGAGLDCSDQTLFSKREEEEKGVPCTGYGEKKSFWLMTITSPGVS 843
           + YN ACGA LDCSDQTLFS  EE +    CTG GE +S W  ++ S  V+
Sbjct: 792 QSYNMACGASLDCSDQTLFSTAEEGD--AECTGSGEIRSPWFSSLWSRLVA 840



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,615,119
Number of extensions: 948533
Number of successful extensions: 2052
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2043
Number of HSP's successfully gapped: 1
Length of query: 845
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 738
Effective length of database: 8,173,057
Effective search space: 6031716066
Effective search space used: 6031716066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)