BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0729000 Os03g0729000|AK108046
(586 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17870.1 | chr1:6150036-6152185 REVERSE LENGTH=574 717 0.0
AT5G35220.1 | chr5:13484606-13487546 REVERSE LENGTH=549 136 3e-32
AT5G05740.1 | chr5:1724023-1726859 REVERSE LENGTH=557 94 3e-19
AT5G35210.1 | chr5:13474499-13482238 REVERSE LENGTH=1707 72 1e-12
>AT1G17870.1 | chr1:6150036-6152185 REVERSE LENGTH=574
Length = 573
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/468 (74%), Positives = 401/468 (85%), Gaps = 2/468 (0%)
Query: 118 VDWRSDEEFKRFMGNPSIEAAIKLEKKRADRKLRELDREPDA-NPXXXXXXXXXXXXXXX 176
+DW++DEEFK+FMGNPSIEAAIKLEK R DRKL+EL++E ++ NP
Sbjct: 104 MDWKTDEEFKKFMGNPSIEAAIKLEKTRTDRKLKELNKESNSENPIIGIYNSLARDSLTK 163
Query: 177 XXXXXXXXXNTFKALDLNKLKSCFGYDTFFAVDVRRFGDGGIFIGNLRKPVEEVRPKLEK 236
TFKALDLNKLKSCFG+DTFFA DVRRFGDGGIFIGNLRKP++EV PKLE
Sbjct: 164 EKERLEKAEETFKALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEA 223
Query: 237 KIAEAAGTDVTLWFMEEKNDDITKQVCMVQPKAEIDLQLEITKLSTPWGYLSAVALAVTT 296
K++EAAG DV +WFMEE++++ITKQVCMVQPKAEIDLQ E T+LSTPWGY+SA+AL VTT
Sbjct: 224 KLSEAAGRDVVVWFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTT 283
Query: 297 FGTIAIMSGFFLKPGATFDDYVSDVLPLFAGFLSILGVSEIATRLTAARYGVKLSPSFLV 356
FGTIA+MSGFFLKP ATFDDY+++V+PLF GFLSILGVSEIATR+TAAR+GVKLSPSFLV
Sbjct: 284 FGTIALMSGFFLKPDATFDDYIANVVPLFGGFLSILGVSEIATRVTAARHGVKLSPSFLV 343
Query: 357 PSNWTGCLGVMNNYESLLPNKKALFDIPVARAASAYLTSVALAVSAFVSDGSLNGGKNAL 416
PSNWTGCLGVMNNYESLLPNKKALFDIPVAR ASAYLTS+ LA +AF+SDGS NGG NAL
Sbjct: 344 PSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNAL 403
Query: 417 FVRPEFFYNNPLLSFVQAVIGPYADELGNVLPNAVEGVGVPVDPLAFAGLLGIVVTSLNL 476
++RP+FF NNPLLSFVQ V+GPYAD+LGNVLPNAVEGVGVPVDPLAFAGLLG+VVTSLNL
Sbjct: 404 YIRPQFFDNNPLLSFVQFVVGPYADDLGNVLPNAVEGVGVPVDPLAFAGLLGMVVTSLNL 463
Query: 477 LPCGRLEGGRIAQALFGRGAAAVLSFATSVALGAGAIIGGSVLCLAWGLFATFVRGGEEI 536
LPCGRLEGGRIAQA+FGR AA+LSF T+ L + GSVLCLAWGLFATF RGGEE
Sbjct: 464 LPCGRLEGGRIAQAMFGRSTAAILSF-TTSLLLGIGGLSGSVLCLAWGLFATFFRGGEET 522
Query: 537 PAQDEITPLGSERYAWGLVLAVVCLLTLFPNGGGTYSSDFLGAPFFRG 584
PA+DEITP+G +R+AWG+VL ++C LTLFPN GGT+S+ F PFFRG
Sbjct: 523 PAKDEITPVGDDRFAWGIVLGLICFLTLFPNSGGTFSTSFFNGPFFRG 570
>AT5G35220.1 | chr5:13484606-13487546 REVERSE LENGTH=549
Length = 548
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 119/398 (29%), Positives = 179/398 (44%), Gaps = 49/398 (12%)
Query: 200 FGYDTFFAVDVRRFGD---GGIFIGNLRKPVEEVRPKLEKKIAEAAGTDVTLWFMEEKND 256
FGY TF+ FGD G +F+GNLR E+V KL++K+ E A L+ +EE N
Sbjct: 152 FGYSTFWVTKEEPFGDLGEGILFLGNLRGKKEDVFAKLQRKLVEVASDKYNLFMIEEPNS 211
Query: 257 DITKQVCMVQPK--AEIDLQLEITKLSTP-----WGYLSAVALAVTTFGT---IAIMS-- 304
+ P+ A + L ++S P W Y+ A+ L + T G+ + I S
Sbjct: 212 EGP------DPRGGARVSFGLLRKEVSEPGPTTLWQYVIALILFLLTIGSSVELGIASQI 265
Query: 305 --------GFFLKPGAT-------FDDYVSDVLPLFAGFLSILGVSEIATRLTAARYGVK 349
+F P A +V LPL G L IL E+ L A VK
Sbjct: 266 NRLPPEVVKYFTDPNAVEPPDMELLYPFVDAALPLAYGVLGILLFHELGHFLAAVPKKVK 325
Query: 350 LSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARA-ASAYLTSVALAVSAFVSDGS 408
LS + +P+ G G + ++S+LP++ DI +A A A L+ AV F+S
Sbjct: 326 LSIPYFIPNITLGSFGAITQFKSILPDRSTKVDISLAGPFAGAALSVSMFAVGLFLSTEP 385
Query: 409 LNGGKNALFVRPEFFYNNPLLSFVQAVIGPYADELGNVLPNAVEGVGVPVDPLAFAGLLG 468
+ + + V F + LL + YA A+ V + PL AG G
Sbjct: 386 -DAANDLVQVPSMLFQGSLLLGLISRATLGYA---------ALHAATVSIHPLVIAGWCG 435
Query: 469 IVVTSLNLLPCGRLEGGRIAQALFGRGAAAVLSFATSVALGAGAIIGGSVLCLAWGLFAT 528
+ T+ N+LP G L+GGR Q FG+ A +T V LG ++GG L L WGL+
Sbjct: 436 LTTTAFNMLPVGCLDGGRAVQGAFGKNALVTFGLSTYVMLGL-RVLGGP-LALPWGLYVL 493
Query: 529 FVRGGEEIPAQDEITPLGSERYAWGLVLAVVCLLTLFP 566
+ E P +++T +G+ R A + ++ +LTL P
Sbjct: 494 ICQRTPEKPCLNDVTEVGTWRKALVGIALILVVLTLLP 531
>AT5G05740.1 | chr5:1724023-1726859 REVERSE LENGTH=557
Length = 556
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 163/379 (43%), Gaps = 41/379 (10%)
Query: 200 FGYDTFFAVDVRRFGDGGIFIGNLRKPVEEVRPKLEKKIAEAAGTDVTLWFMEEKNDDIT 259
FG+DTFF + G +F GNLR K++ ++ G L+ + DD
Sbjct: 192 FGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKTRMENNFGDQYKLFLLTNPEDD-- 249
Query: 260 KQVCMVQPKAEIDLQLEITKLSTPWGYLSAVALAVTTFGTIAIMSGFFLKPGATFDDYVS 319
K V +V P+ ++ + T W A +FG +A+ + F A D +S
Sbjct: 250 KPVAVVVPRRSLEPE---TTAVPEW-------FAAGSFGLVALFTLFLRNVPALQSDLLS 299
Query: 320 --DVLPLFAGFLS-------ILGVSEIATRLTAARYGVKLSPSFLVPSNWTGCLGVMNNY 370
D L L L +LGV E+ L A G+KL F VPS G G +
Sbjct: 300 AFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSWQIGSFGAITRI 359
Query: 371 ESLLPNKKALFDIPVARAASAYLTSVALAVSAFV---SDGSLNGGKNALFVRPEFFYNNP 427
++++ ++ L + A + + + L + SDG + V F+ +
Sbjct: 360 KNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGI------GVVVDASVFHESF 413
Query: 428 LLSFVQAVIGPYADELGNVLPNAVEGVGVPVDPLAFAGLLGIVVTSLNLLPCGRLEGGRI 487
L + ++ LG+ L EG + ++PL G+++ +N +P G L+GG+I
Sbjct: 414 LAGGIAKLL------LGDALK---EGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKI 464
Query: 488 AQALFGRGAAAVLSFATSVALGAGAIIGGSVLCLAWGLFATFVRGGEEIPAQDEITPLGS 547
A +++GR A L+ A+ LG A+ S + W + F++ G P +EIT
Sbjct: 465 AFSIWGRKTATRLTGASIALLGLSALF--SDVAFYWVVLIFFLQRGPIAPLAEEITVPDD 522
Query: 548 ERYAWGLVLAVVCLLTLFP 566
+ + G+++ + LL P
Sbjct: 523 KYVSLGILVLFLSLLVCLP 541
>AT5G35210.1 | chr5:13474499-13482238 REVERSE LENGTH=1707
Length = 1706
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 17/174 (9%)
Query: 362 GCLGVMNNYESLLPNKKALFDIPVARA-ASAYLTSVALAVSAFVSDGSLNGGKNALFVRP 420
G G + ++S+LP++ DI +A A A L+ AV F+S + N L P
Sbjct: 1546 GSFGAITQFKSILPDRSTKVDISLAGPFAGAALSVSMFAVGLFLS--TEPDAANDLVQVP 1603
Query: 421 EFFYNNPLLS--FVQAVIGPYADELGNVLPNAVEGVGVPVDPLAFAGLLGIVVTSLNLLP 478
+ LL +A +G YA A+ V + PL AG G+ T+ N+LP
Sbjct: 1604 SMLFQGSLLLGLISRATLG-YA---------ALHAATVSIHPLVIAGWCGLTTTAFNMLP 1653
Query: 479 CGRLEGGRIAQALFGRGAAAVLSFATSVALGAGAIIGGSVLCLAWGLFATFVRG 532
G L+GGR Q FG+ A +T V LG ++GG L L WGL+ R
Sbjct: 1654 VGCLDGGRAVQGAFGKNALVTFGLSTYVMLGL-RVLGGP-LALPWGLYVLICRN 1705
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.139 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,184,003
Number of extensions: 464506
Number of successful extensions: 1094
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1082
Number of HSP's successfully gapped: 4
Length of query: 586
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 482
Effective length of database: 8,255,305
Effective search space: 3979057010
Effective search space used: 3979057010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)