BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0722800 Os03g0722800|AK065777
(499 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G02700.1 | chr5:609381-611679 REVERSE LENGTH=457 60 2e-09
AT1G13570.1 | chr1:4642528-4643930 REVERSE LENGTH=417 60 3e-09
AT3G28410.1 | chr3:10640152-10642071 REVERSE LENGTH=466 57 2e-08
AT5G03100.1 | chr5:726832-727980 FORWARD LENGTH=308 54 2e-07
>AT5G02700.1 | chr5:609381-611679 REVERSE LENGTH=457
Length = 456
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 131/310 (42%), Gaps = 45/310 (14%)
Query: 46 LHHLPDDVLHRILSRLTFRESSRMGLLSRKWQKLW-RSCCPKLIFTRATMFKPGNKTIRR 104
++++PDD+LH ILS + + R +LSR+W+ +W + C + M +
Sbjct: 29 INYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDITLKHGAM--------NQ 80
Query: 105 TRTNFARRVNSLLRQLCAPPTLNKFVVKFGLRRKHTCHVNRWVGFCSKLRARHITF---D 161
T T++ P + F + L V+ W+ F ++++ D
Sbjct: 81 TLTSY------------TAPIITSFKLVMDLNSNTVPQVDSWIEFALSRNVQNLSVFVRD 128
Query: 162 FTPGVKGIFRGLADEKYIFHLHVFSVPDRSPAHIKSLHLSYVWLNTATTGFTGFANLKKL 221
FT F IF+L + +K L ++ + + T + +L+ L
Sbjct: 129 FTYSKTYRFPD------IFYLS---------SSLKLLDVTLDFFDMIPTCTVSWKSLRNL 173
Query: 222 TLHKVSFLNDFQHLMLSECTALEWLSI-SCSSFTELTLCKP--LRRLRYLSLHYCYMEKV 278
TL ++ H +LS C LE L++ +C L L K LRRL ++ Y V
Sbjct: 174 TLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLD-INQQYRRTGPV 232
Query: 279 ELEAPNLTSVDLTNRPIPLALSESLKVMEANIKLLHK--SVLYGDNLDYICTELPAALPH 336
+ AP++ + LT P + + + EAN+ ++ S L D + E+ + +
Sbjct: 233 AIVAPHIYYLRLTYSSTPSTIVDVSSLSEANLTIISSLLSPLTADGYQTMALEMLSKFHN 292
Query: 337 VQKLSITSTL 346
V++L++ TL
Sbjct: 293 VKRLTVGETL 302
>AT1G13570.1 | chr1:4642528-4643930 REVERSE LENGTH=417
Length = 416
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 141/340 (41%), Gaps = 50/340 (14%)
Query: 46 LHHLPDDVLHRILSRLTFRESSRMGLLSRKWQKLWRSCCPKLIFTRATMFKPGNKTIRRT 105
+ LP ++ IL+RL+ R++ R +LS KW+ W S L+F + ++ +
Sbjct: 8 ISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKW-STLTDLVFDEKCVSPSNDRCV--V 64
Query: 106 RTNFARRVNSLLRQLCAPPTLNKFVVKFGLRRKHTCHVNRWVGFCSKLRARHITFDFTPG 165
TN R + +L P ++KF + ++ +++W+ F S+ G
Sbjct: 65 ETNLVRFITGVLLLHQGP--IHKFQLSTSFKQCRP-DIDQWLLFLSR-----------NG 110
Query: 166 VKGIFRGLADEKYIFHLHVFSVPDRSPAHIKSLHLSYVWLNTATTGFTGFANLKKLTLHK 225
+K + L + ++ +F+ + L L + + F GF+ LK L LH+
Sbjct: 111 IKELVLKLGEGEFRVPACLFNC-----LKLTCLELCHCEFDPPQY-FKGFSYLKSLNLHQ 164
Query: 226 VSFLNDFQHLMLSECTALEWLSISCSSFTELTLCKPLRRLRYLSLHYCYMEKVELEAPNL 285
+ + ++S C LE+LS+S L++ P +L Y Y++
Sbjct: 165 ILVAPEVIESLISGCPLLEFLSLSYFDSLVLSISAP-------NLMYLYLDG------EF 211
Query: 286 TSVDLTNRPIPLALSESLKVMEANIKLLHKSVLYGDNLDYICTELPAALPHVQKLS---- 341
+ L N P +A+S S+ + E S DY + +P ++KL
Sbjct: 212 KDIFLENTPKLVAISVSMYMHEDVTDFEQSS-------DYNLVKFLGGVPLLEKLVGYIY 264
Query: 342 ITSTLCIYDELQSFAKTSVRFINLRHLSLYLPLYGDGRSV 381
T L I D+ + + +I+L+ + LY + D V
Sbjct: 265 FTKYLSIGDDP---GRLPLTYIHLKTIELYQVCFEDADEV 301
>AT3G28410.1 | chr3:10640152-10642071 REVERSE LENGTH=466
Length = 465
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 130/312 (41%), Gaps = 48/312 (15%)
Query: 46 LHHLPDDVLHRILSRLTFRESSRMGLLSRKWQKLWRSCCPKLIFTRATMFKPGNKTIRRT 105
++++PDD+LH ILS + + R +LSR+W+ +W C T K + +T
Sbjct: 30 INYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVW---CE----TPCLDIKLKHGETNQT 82
Query: 106 RTNFARRVNSLLRQLCAPPTLNKFVVKFGLRRKHTCHVNRWVGFCSKLRARHITF---DF 162
T++ P + F + L V+ W+ F ++++ DF
Sbjct: 83 LTSY------------TAPIITSFKLVMDLNDNTVPQVDSWIEFALSRNVQNLSVFVRDF 130
Query: 163 TPGVKGIFRGLADEKYIFHLHVFSVPD--RSPAHIKSLHLSYVWLNTATTGFTGFANLKK 220
T + + PD + +K L ++ + + T + +L+
Sbjct: 131 T-----------------YTKTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAVSWKSLRN 173
Query: 221 LTLHKVSFLNDFQHLMLSECTALEWLSI-SCSSFTELTLCKP--LRRLRYLSLHYCYMEK 277
LTL ++ H +LS C LE L++ +C L L K LRRL ++ Y
Sbjct: 174 LTLRFCQIPDESMHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLD-INRQYRRTGP 232
Query: 278 VELEAPNLTSVDLTNRPIPLALSESLKVMEANIKLLHK---SVLYGDNLDYICTELPAAL 334
+ + AP++ + LT P + + + EAN+ ++ S L D + E+ +
Sbjct: 233 IAIVAPHIYYLRLTYSSTPSTIVDVSSLSEANLNIISDRLLSPLTADRYQTMALEMLSKF 292
Query: 335 PHVQKLSITSTL 346
+V++L++ T+
Sbjct: 293 HNVKRLTVGETI 304
>AT5G03100.1 | chr5:726832-727980 FORWARD LENGTH=308
Length = 307
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 126/306 (41%), Gaps = 46/306 (15%)
Query: 46 LHHLPDDVLHRILSRLTFRESSRMGLLSRKWQKLWRSCCPKLIFTRATMFKPGNKTIRRT 105
+ LPD++LH IL+ + + R +LS++W+ +W I NKT+
Sbjct: 11 ISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVDPDSLNKTLSSY 70
Query: 106 RTNFARRVNSLLRQLCAPPTLNKFVVKFGLRRKHTCHVNRWVGFCSKLRARHITFDFTPG 165
T P + F V R ++ W+ +A +++ FT
Sbjct: 71 ST----------------PKIKSFDVTIS-RDVTVPEIDTWINLALSRKAENVSLRFTSH 113
Query: 166 VKGIFRGLADEKYIFHLHVFSVPDRSPAHIKSLHLSYVWLNTATTGFTGFANLKKLTLHK 225
+ FR D +I + +K L L+ V+ +++L+ L+L++
Sbjct: 114 YR--FR---DTFFI------------NSSLKQLSLTLVYCILNPKCVVSWSSLRNLSLNR 156
Query: 226 VSFLNDFQHLMLSECTALEWLSIS-CSSFTELTLCK--PLRRLRYLSLHYCYMEKVELEA 282
+D +L+ C+ LE L+++ C +L L K LRRL L + V A
Sbjct: 157 CKVSDDSIAKILTGCSLLESLTLNLCDRLNDLDLSKSLSLRRLEILGDRWTPERIV---A 213
Query: 283 PNLTSVDLTNRPIPLALSESLKVMEANIKLLHKSVLY------GDNLDYICTELPAALPH 336
P++ + L N P L + + EAN+ L + Y ++L Y+ + L +
Sbjct: 214 PHIRYLRLENYQRPSTLVDVSSLTEANLGLSKHVLDYFTCEMETESLQYMVRQTVVKLQN 273
Query: 337 VQKLSI 342
++KL+I
Sbjct: 274 IKKLTI 279
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,115,302
Number of extensions: 403245
Number of successful extensions: 1646
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1644
Number of HSP's successfully gapped: 4
Length of query: 499
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 396
Effective length of database: 8,282,721
Effective search space: 3279957516
Effective search space used: 3279957516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 114 (48.5 bits)