BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0721700 Os03g0721700|AK106706
         (336 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01311.1  | chr3:103043-104287 REVERSE LENGTH=293               54   8e-08

>AT3G01311.1 | chr3:103043-104287 REVERSE LENGTH=293
          Length = 292

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 103/273 (37%), Gaps = 27/273 (9%)

Query: 58  FENGQCVRLLNRGRGGYLFADESGVRVRTDCRRGLINTVWCVQILGGDTPHILLRGAYGR 117
           F     VRL +     YL ADE    V  D R    NT W V+I+ G    I L+  YG+
Sbjct: 4   FRKATIVRLRSHN-DKYLSADEDQESVHQDRRGTTKNTRWTVEIVPGSNV-IRLQSCYGK 61

Query: 118 YVAGTPLGADEGHIGILVTQRVLETMDTNVMWRTXXXXXXXXXXLINASSFNGGLRALRT 177
           Y+  T +    G  G  V Q + E +D++  W             +   S  G  + LR 
Sbjct: 62  YLTATNIHFLLGATGEKVLQTLPEKLDSSAEWEPLSDDGVH----VRFKSRYG--QYLRA 115

Query: 178 NGKYQRWNTGVSLQCIDRFNARFSSMMEWEVQVIPTRVQRPPFQVGGA-----------A 226
           N     W   ++     R   +   M  W V V+  RV +   +   +           +
Sbjct: 116 NKGVPPWRNSITHDIPSRTVTQDWVM--WTVDVLQIRVIKDDAESTHSSSTFSRIESDDS 173

Query: 227 WLCGLQRRGSGEIQVGVRVADDDGNFNIP-GPQNLSVPGRSLIELGSVLEDRLGSNFRFR 285
           ++  L  +  G + +     DD GN N   G ++L   G  LIEL   LE+         
Sbjct: 174 FIVSLPLKSEGRL-IYYETGDDSGNINKEIGEKSLIFHGSELIELKKKLEEET----EME 228

Query: 286 NMSIFIRAGSLGQPFPLLTDLPSELDYFEVVVF 318
           ++ I+ R     +  PL   LP       ++VF
Sbjct: 229 DVMIWCRNPLNEKLCPLQLHLPPNNATMHIIVF 261



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.142    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,359,769
Number of extensions: 325197
Number of successful extensions: 457
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)