BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0713100 Os03g0713100|J033048F03
(141 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14830.1 | chr1:5107699-5111470 REVERSE LENGTH=615 134 2e-32
AT3G60190.1 | chr3:22244367-22247651 REVERSE LENGTH=625 130 3e-31
AT3G61760.1 | chr3:22860546-22864092 REVERSE LENGTH=611 119 5e-28
AT5G42080.1 | chr5:16820661-16824536 REVERSE LENGTH=611 116 3e-27
AT2G44590.3 | chr2:18403856-18406961 REVERSE LENGTH=613 110 3e-25
AT4G33650.2 | chr4:16161073-16166587 FORWARD LENGTH=810 64 2e-11
AT2G14120.3 | chr2:5954253-5960015 REVERSE LENGTH=810 59 9e-10
>AT1G14830.1 | chr1:5107699-5111470 REVERSE LENGTH=615
Length = 614
Score = 134 bits (336), Expect = 2e-32, Method: Composition-based stats.
Identities = 69/104 (66%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Query: 1 MATMGSLIGLVNRIQRACTVLXXXXXXXXXXSLWEALPXXXXXXXXXXXXXXXLESIVGR 60
MATM SLIGL+N+IQRACTVL SLWEALP LES+VGR
Sbjct: 1 MATMKSLIGLINKIQRACTVLGDHGGEGM--SLWEALPTVAVVGGQSSGKSSVLESVVGR 58
Query: 61 DFLPRGSGIVTRRPLVLQLHKTEGG-QEYAEFLHAPRKRFTDFG 103
DFLPRGSGIVTRRPLVLQLHKTE G EYAEFLHAP+KRF DF
Sbjct: 59 DFLPRGSGIVTRRPLVLQLHKTEDGTTEYAEFLHAPKKRFADFA 102
>AT3G60190.1 | chr3:22244367-22247651 REVERSE LENGTH=625
Length = 624
Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 73/107 (68%), Gaps = 4/107 (3%)
Query: 1 MATMGSLIGLVNRIQRACTVLXXX---XXXXXXXSLWEALPXXXXXXXXXXXXXXXLESI 57
M TM SLIGLVNRIQRACTVL SLWEALP LESI
Sbjct: 1 MTTMESLIGLVNRIQRACTVLGDYGGGTGSNAFNSLWEALPTVAVVGGQSSGKSSVLESI 60
Query: 58 VGRDFLPRGSGIVTRRPLVLQLHKTEGG-QEYAEFLHAPRKRFTDFG 103
VGRDFLPRGSGIVTRRPLVLQLHKT+ G +EYAEFLH P+K+FTDF
Sbjct: 61 VGRDFLPRGSGIVTRRPLVLQLHKTDDGTEEYAEFLHLPKKQFTDFA 107
>AT3G61760.1 | chr3:22860546-22864092 REVERSE LENGTH=611
Length = 610
Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 68/100 (68%)
Query: 4 MGSLIGLVNRIQRACTVLXXXXXXXXXXSLWEALPXXXXXXXXXXXXXXXLESIVGRDFL 63
M SLI LVN+IQRACT L +LW++LP LES+VG+DFL
Sbjct: 1 MESLIALVNKIQRACTALGDHGEGSSLPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFL 60
Query: 64 PRGSGIVTRRPLVLQLHKTEGGQEYAEFLHAPRKRFTDFG 103
PRG+GIVTRRPLVLQLH+ + G+EYAEF+H P+K+FTDF
Sbjct: 61 PRGAGIVTRRPLVLQLHRIDEGKEYAEFMHLPKKKFTDFA 100
>AT5G42080.1 | chr5:16820661-16824536 REVERSE LENGTH=611
Length = 610
Score = 116 bits (291), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/101 (57%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 4 MGSLIGLVNRIQRACTVLXXXXXXXXXXSLWEALPXXXXXXXXXXXXXXXLESIVGRDFL 63
M +LI LVN+IQRACT L +LW++LP LESIVG+DFL
Sbjct: 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL 60
Query: 64 PRGSGIVTRRPLVLQLHKTEGG-QEYAEFLHAPRKRFTDFG 103
PRGSGIVTRRPLVLQL K + G +EYAEFLH PRK+FTDF
Sbjct: 61 PRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFA 101
>AT2G44590.3 | chr2:18403856-18406961 REVERSE LENGTH=613
Length = 612
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 4 MGSLIGLVNRIQRACTVLXXXX-XXXXXXSLWEALPXXXXXXXXXXXXXXXLESIVGRDF 62
M SLI L+N IQRACTV+ SLWEALP LESIVGRDF
Sbjct: 1 MESLIVLINTIQRACTVVGDHGGDSNALSSLWEALPSVAVVGGQSSGKSSVLESIVGRDF 60
Query: 63 LPRGSGIVTRRPLVLQLHKTEGGQE-YAEFLHAPRKRFTDFG 103
LPRGSGIVTRRPLVLQLHKTE G E AEFLH K+FT+F
Sbjct: 61 LPRGSGIVTRRPLVLQLHKTENGTEDNAEFLHLTNKKFTNFS 102
>AT4G33650.2 | chr4:16161073-16166587 FORWARD LENGTH=810
Length = 809
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 53/106 (50%), Gaps = 14/106 (13%)
Query: 5 GSLIGLVNRIQRACTVLXXXXXXXXXXSLWEALPXXXXXXXXXXXXXXXLESIVGRDFLP 64
S+I +VN++Q L ALP LE++VGRDFLP
Sbjct: 35 SSVIPIVNKLQDIFAQLGSQSTI--------ALPQVVVVGSQSSGKSSVLEALVGRDFLP 86
Query: 65 RGSGIVTRRPLVLQLHKTE----GG--QEYAEFLHAPRKRFTDFGK 104
RG+ I TRRPLVLQL +T+ GG E+ EF H P RF DF +
Sbjct: 87 RGNDICTRRPLVLQLLQTKSRANGGSDDEWGEFRHLPETRFYDFSE 132
>AT2G14120.3 | chr2:5954253-5960015 REVERSE LENGTH=810
Length = 809
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 5 GSLIGLVNRIQRACTVLXXXXXXXXXXSLWEALPXXXXXXXXXXXXXXXLESIVGRDFLP 64
S+I +VN++Q L ALP LE++VGRDFLP
Sbjct: 19 SSVIPIVNKLQDIFAQLGSQSTI--------ALPQVAVVGSQSSGKSSVLEALVGRDFLP 70
Query: 65 RGSGIVTRRPLVLQLHKT----EGG--QEYAEFL-HAPRKRFTDFGK 104
RG+ I TRRPL LQL +T +GG +E+ EFL H P +R DF +
Sbjct: 71 RGNDICTRRPLRLQLVQTKPSSDGGSDEEWGEFLHHDPVRRIYDFSE 117
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.142 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,540,277
Number of extensions: 86102
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 7
Length of query: 141
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 52
Effective length of database: 8,666,545
Effective search space: 450660340
Effective search space used: 450660340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 106 (45.4 bits)