BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0712300 Os03g0712300|AK120951
(161 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G23260.1 | chr1:8257209-8258573 REVERSE LENGTH=159 234 1e-62
AT1G70660.1 | chr1:26640755-26641949 FORWARD LENGTH=160 229 7e-61
AT2G36060.2 | chr2:15143012-15143998 REVERSE LENGTH=147 211 1e-55
AT3G52560.4 | chr3:19494678-19495954 REVERSE LENGTH=165 211 2e-55
AT5G59300.1 | chr5:23919868-23921304 REVERSE LENGTH=204 57 6e-09
AT3G46460.1 | chr3:17096120-17097315 REVERSE LENGTH=167 55 1e-08
AT5G25760.1 | chr5:8967983-8969173 FORWARD LENGTH=158 53 8e-08
AT1G50490.1 | chr1:18705005-18706303 REVERSE LENGTH=181 50 7e-07
AT3G13550.1 | chr3:4423569-4424797 REVERSE LENGTH=183 49 1e-06
AT3G20060.1 | chr3:7002927-7004283 REVERSE LENGTH=182 49 2e-06
AT5G50870.2 | chr5:20699626-20700998 REVERSE LENGTH=204 47 5e-06
>AT1G23260.1 | chr1:8257209-8258573 REVERSE LENGTH=159
Length = 158
Score = 234 bits (598), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 110/160 (68%), Positives = 130/160 (81%), Gaps = 2/160 (1%)
Query: 1 MGSEGSAGVVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNTV 60
M SE + VVVPRNFR RGEKGIGDGTVSYGMDDADDIYM+SWTGTI+GPPNT
Sbjct: 1 MSSEEAK--VVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTA 58
Query: 61 HEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQETGMVEPSLFPMLGNWQREHTMQD 120
+EG+I+QLKLFC +YP+ PPTVRFQTRINM+CVN ETG+VEPSLFPML NW+RE+TM+D
Sbjct: 59 YEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMED 118
Query: 121 ILIGLKKEMSAPQNRRLHQPHDGNEDQRVEQKGLSLRCVI 160
IL+ LKKEM NR+L QP +GNE+ R + KG + CV+
Sbjct: 119 ILVKLKKEMMTSHNRKLAQPPEGNEEARADPKGPAKCCVM 158
>AT1G70660.1 | chr1:26640755-26641949 FORWARD LENGTH=160
Length = 159
Score = 229 bits (583), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 108/161 (67%), Positives = 129/161 (80%), Gaps = 2/161 (1%)
Query: 1 MGSEGSAGVVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNTV 60
MGSE VVVPRNFR RGEKGIGDGTVSYGMDDADDI M+SWTGTI+GP NT
Sbjct: 1 MGSEEEK--VVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTA 58
Query: 61 HEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQETGMVEPSLFPMLGNWQREHTMQD 120
+EG+I+QLKLFC DYP+ PPTVRFQ+RINM+CVN E G+V+PS FPML NW+RE TM+D
Sbjct: 59 YEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMED 118
Query: 121 ILIGLKKEMSAPQNRRLHQPHDGNEDQRVEQKGLSLRCVIM 161
+LI LKKEM + QNR+L QP +GNE+ R + KGL ++C +M
Sbjct: 119 LLIQLKKEMMSSQNRKLAQPLEGNEEGRTDPKGLVVKCCVM 159
>AT2G36060.2 | chr2:15143012-15143998 REVERSE LENGTH=147
Length = 146
Score = 211 bits (537), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/140 (71%), Positives = 114/140 (81%), Gaps = 1/140 (0%)
Query: 5 GSAGVVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPN-TVHEG 63
GS VVVPRNFR RGEKGIGDGTVSYGMDD DDIYMRSWTGTIIGP N TVHEG
Sbjct: 4 GSGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNVTVHEG 63
Query: 64 RIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQETGMVEPSLFPMLGNWQREHTMQDILI 123
RIYQLKLFCD DYP++PPTVRF +RINM+CVN +TG+V+ F +L NWQR++TM+DIL
Sbjct: 64 RIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILT 123
Query: 124 GLKKEMSAPQNRRLHQPHDG 143
LKKEM+A NR+L QP +G
Sbjct: 124 QLKKEMAASHNRKLVQPPEG 143
>AT3G52560.4 | chr3:19494678-19495954 REVERSE LENGTH=165
Length = 164
Score = 211 bits (536), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/162 (64%), Positives = 119/162 (73%), Gaps = 20/162 (12%)
Query: 1 MGSEGSAGVVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPN-- 58
+GS GS+ VVVPRNFR RGEKGIGDGTVSYGMDD DDIYMRSWTGTIIGP N
Sbjct: 3 LGSGGSS--VVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNIM 60
Query: 59 ----------------TVHEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQETGMVE 102
TVHEGRIYQLKLFCD DYP++PPTVRF +R+NM+CVN ETG+V+
Sbjct: 61 PLLLLLVVTEINFMSQTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVD 120
Query: 103 PSLFPMLGNWQREHTMQDILIGLKKEMSAPQNRRLHQPHDGN 144
P F +L NWQRE+TM+DIL+ LKKEMS NR+L QP +G
Sbjct: 121 PKKFGLLANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEGT 162
>AT5G59300.1 | chr5:23919868-23921304 REVERSE LENGTH=204
Length = 203
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 18/140 (12%)
Query: 34 VSYGMDDADDIYMRSWTGTIIGPPNTVHEGRIYQLKLFCDTDYPDRPPTVRFQT------ 87
S G+ D +I+ W+ TIIGPP+T++EG + + +YP+ PPTVRF +
Sbjct: 61 FSAGLVDEKNIF--EWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPN 118
Query: 88 -----RINMSCVNQETGMVEPSLFPMLGN-WQREHTMQDILIGLKKEMSAPQNRRLHQPH 141
R+ +S ++ +PS + + W HT++ I++ + +S P +
Sbjct: 119 VYSDGRVCISILHPPGD--DPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVE 176
Query: 142 DGNE--DQRVEQKGLSLRCV 159
E D+R E K RCV
Sbjct: 177 AAKEWRDKRDEFKKKVSRCV 196
>AT3G46460.1 | chr3:17096120-17097315 REVERSE LENGTH=167
Length = 166
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 35 SYGMDDADDIYMRSWTGTIIGPPNTVHEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCV 94
S G+ D +I+ W+ TIIGPP+T++EG + + +YP+ PPTVRF + I V
Sbjct: 25 SAGLVDEKNIF--EWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNV 82
Query: 95 NQETGMV---------EPSLFPMLGN-WQREHTMQDILIGLKKEMSAPQNRRLHQPHDGN 144
+ + +PS + + W HT++ I++ + +S P +
Sbjct: 83 YPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAK 142
Query: 145 E--DQRVEQKGLSLRCV 159
E ++R E K RCV
Sbjct: 143 EWREKRDEFKKKVSRCV 159
>AT5G25760.1 | chr5:8967983-8969173 FORWARD LENGTH=158
Length = 157
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 42 DDIYMRSWTGTIIGPPNTVHEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQETGMV 101
DD + WT I GP T +EG ++QL YP +PP VRF T+I V+ +TG
Sbjct: 30 DDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTG-- 87
Query: 102 EPSLFPMLGNWQREHTMQDILIGLKKEMSAPQ 133
E L + W T+Q + + M+ P+
Sbjct: 88 EICLDILKNAWSPAWTLQSVCRAIIALMAHPE 119
>AT1G50490.1 | chr1:18705005-18706303 REVERSE LENGTH=181
Length = 180
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 37 GMDDADDIYMRSWTGTIIGPPNTVHEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQ 96
+ D+I+ W GTI G +TV EG Y+L L DYP +PP V+F+T C +
Sbjct: 57 AFPEEDNIFC--WKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFET----CCFHP 110
Query: 97 ETGMVEPSLFPMLGN-WQREHTMQDILIGLKK-----EMSAPQNRRLHQPHDGNEDQR 148
+ +L + W + ++ IL+ ++ +S+P N + Q E+ R
Sbjct: 111 NVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQEEYR 168
>AT3G13550.1 | chr3:4423569-4424797 REVERSE LENGTH=183
Length = 182
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 42 DDIYMRSWTGTIIGPPNTVHEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQETGMV 101
D++Y W TIIGP T +EG I+ L + +DYP +PP + F+TRI V+ +
Sbjct: 63 DNLY--HWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDL- 119
Query: 102 EPSLFPMLGNWQREHTMQDILIGLKKEMSAPQ 133
S+ + +W T+ +L ++ P+
Sbjct: 120 --SVNILRDSWSPALTITKVLQAIRSIFLKPE 149
>AT3G20060.1 | chr3:7002927-7004283 REVERSE LENGTH=182
Length = 181
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 40 DADDIYMRSWTGTIIGPPNTVHEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQETG 99
+ D+I+ W GTI G +TV EG Y+L L DYP + P V+F+T C +
Sbjct: 61 EEDNIF--CWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFET----CCFHPNVD 114
Query: 100 MVEPSLFPMLGN-WQREHTMQDILIGLKK-----EMSAPQNRRLHQPHDGNEDQR 148
+ +L + W + ++ IL+ ++ +S+P N + Q E+ R
Sbjct: 115 LYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSNQEEYR 169
>AT5G50870.2 | chr5:20699626-20700998 REVERSE LENGTH=204
Length = 203
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 50 TGTIIGPPNTVHEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQETGMVEPSLFPML 109
TGTI GP T +EG +Q+ + YP PP ++F T++ ++ ++G + L +
Sbjct: 36 TGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAI--CLDILK 93
Query: 110 GNWQREHTMQDILIGLKKEMSAPQNR 135
W T++ L+ ++ +SAP+ +
Sbjct: 94 DQWSPALTLKTALVSIQALLSAPEPK 119
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,965,106
Number of extensions: 171727
Number of successful extensions: 302
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 11
Length of query: 161
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 70
Effective length of database: 8,611,713
Effective search space: 602819910
Effective search space used: 602819910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)