BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0711500 Os03g0711500|AK058652
(504 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G62020.1 | chr1:22919814-22923728 FORWARD LENGTH=1217 479 e-135
AT2G21390.1 | chr2:9152428-9156577 FORWARD LENGTH=1219 474 e-134
>AT1G62020.1 | chr1:22919814-22923728 FORWARD LENGTH=1217
Length = 1216
Score = 479 bits (1233), Expect = e-135, Method: Compositional matrix adjust.
Identities = 223/328 (67%), Positives = 269/328 (82%), Gaps = 1/328 (0%)
Query: 178 TPKNAGNARSAVFVAPPPGMPVSLIWTQKSSLAGEHAAAGNFDTAMRLLSRQLGIKNFAP 237
TPK + NARS+VFV PP GMPVS W+QKSSLA E AAAG+FDTAMRLL RQLGIKNF P
Sbjct: 889 TPKASANARSSVFVTPPQGMPVSQSWSQKSSLAAEQAAAGSFDTAMRLLHRQLGIKNFTP 948
Query: 238 LKPLFLDLHMGSHSYLHALATAPIIPVAVEKGWSESASPNVRGPPALVFTFPQMEDRLKA 297
LK +FLDL GSHSYL A ++ P++P+A+E+GWSES+SPNVR PPALV+ F Q++++LK+
Sbjct: 949 LKSMFLDLFNGSHSYLRAFSSCPVVPLAIERGWSESSSPNVRSPPALVYDFSQLDEKLKS 1008
Query: 298 AYKATTDGKFPEALRQFLSILHTIPLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKE 357
YKATT GKF EALR FLSILHTIPL+VV++RREVDEVKELI IV+EYVLGL+MELKR+E
Sbjct: 1009 GYKATTTGKFTEALRLFLSILHTIPLVVVETRREVDEVKELIVIVKEYVLGLQMELKRRE 1068
Query: 358 LRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPNEX 417
++DD RQQELAAYFT+C LQ H+RL L SAMG+CYK KN ATA +FAR LLE +P +
Sbjct: 1069 MKDDPVRQQELAAYFTHCNLQTPHLRLALLSAMGVCYKAKNLATASNFARRLLETSPVDS 1128
Query: 418 XXXXXXXXXXXCS-GKKDSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSI 476
D ++LNYD+RNPFVVCG+TYVPIYRGQKDVSCPYC +RFVP+
Sbjct: 1129 QAKMARQVVQAAERNMTDETKLNYDFRNPFVVCGSTYVPIYRGQKDVSCPYCTARFVPNQ 1188
Query: 477 EGQLCTICELAVVGADASGLVCSPTQLR 504
EG +CT+C+LAV+GADASGL+CSP+Q+R
Sbjct: 1189 EGNICTVCDLAVIGADASGLLCSPSQVR 1216
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 93/113 (82%)
Query: 1 MDKVGFMCKIAGQNNNLMGQFHNALYLGDAMKRVEILENAGQLPLAYITATTHGLTEIAD 60
+DK+ + KIA NN+MGQFHNALYLGD +RV+ILENAG LPLAYITA+ HGL +IA+
Sbjct: 715 LDKLSKLMKIAEVKNNVMGQFHNALYLGDVKERVKILENAGHLPLAYITASVHGLNDIAE 774
Query: 61 RLAAELGENIPSLPEGKARSLLIPPAPLTASGDWPLLRVMRGIFEGGLDATGK 113
RLA ELG+N+PSLPEGK SLL+PP P+ GDWPLLRVM+GIFEGGL++ +
Sbjct: 775 RLATELGDNVPSLPEGKTPSLLMPPTPIMCGGDWPLLRVMKGIFEGGLESADR 827
>AT2G21390.1 | chr2:9152428-9156577 FORWARD LENGTH=1219
Length = 1218
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 220/329 (66%), Positives = 268/329 (81%), Gaps = 2/329 (0%)
Query: 178 TPKNAGNARSAVFVAPPPGMPVSLIWTQKSSLAGEHAAAGNFDTAMRLLSRQLGIKNFAP 237
TPK + NARS+ FV PP GMPVS IW+QKSSLA E AAAG+FDTAMRLL RQLGIKNFAP
Sbjct: 890 TPKASANARSSTFVTPPQGMPVSQIWSQKSSLAAEQAAAGSFDTAMRLLHRQLGIKNFAP 949
Query: 238 LKPLFLDLHMGSHSYLHALATAPIIPVAVEKGWSESASPNVRGPPALVFTFPQMEDRLKA 297
LK +FLDL GSHSYL A +++P++P+A+E+GWSES+SPNVRGPPALVF F Q+E +LK+
Sbjct: 950 LKSMFLDLFSGSHSYLRAFSSSPVVPLAIERGWSESSSPNVRGPPALVFDFSQLEAKLKS 1009
Query: 298 AYKATTDGKFPEALRQFLSILHTIPLIVVDSRREVDEVKELIEIVREYVLGLRMELKRKE 357
YKATT GK EALR FLSIL TIPL+VV+SRREVDEVKEL+ IV+EYVLGL++ELKR+E
Sbjct: 1010 GYKATTAGKLSEALRVFLSILQTIPLVVVESRREVDEVKELVIIVKEYVLGLQLELKRRE 1069
Query: 358 LRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLLENNPNEX 417
++DD RQQELAAYFT+CKLQ H+RL SAM +CYK KN ATA HFAR LL+ NP
Sbjct: 1070 MKDDPVRQQELAAYFTHCKLQTPHLRLAYFSAMTVCYKSKNMATAAHFARSLLDTNPTIE 1129
Query: 418 XXXXXXXXXXXCSGKK--DSSELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPS 475
+ + D++ LNYD+RNPFV+CG+TYVPIY+GQKDV+CPYC +RFVPS
Sbjct: 1130 SQARTARQVMQAAERNMTDATTLNYDFRNPFVICGSTYVPIYKGQKDVACPYCTARFVPS 1189
Query: 476 IEGQLCTICELAVVGADASGLVCSPTQLR 504
EG +C++C+LAV+GADASGL+CS +Q+R
Sbjct: 1190 QEGNICSVCDLAVIGADASGLLCSASQVR 1218
Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 95/113 (84%)
Query: 1 MDKVGFMCKIAGQNNNLMGQFHNALYLGDAMKRVEILENAGQLPLAYITATTHGLTEIAD 60
+DK+ + KIA NN+MGQFHNALYLGD +RV+ILENAG LPLAYITA+ HGLT+IA+
Sbjct: 715 LDKLSKLMKIAEVKNNVMGQFHNALYLGDVKERVKILENAGHLPLAYITASVHGLTDIAE 774
Query: 61 RLAAELGENIPSLPEGKARSLLIPPAPLTASGDWPLLRVMRGIFEGGLDATGK 113
RLA ELG+N+PSLPEGK SLL+PP+P+ GDWPLLRVM+GIFEGGL++ +
Sbjct: 775 RLAIELGDNVPSLPEGKTPSLLMPPSPIMCGGDWPLLRVMKGIFEGGLESANR 827
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,551,501
Number of extensions: 372638
Number of successful extensions: 869
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 865
Number of HSP's successfully gapped: 4
Length of query: 504
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 401
Effective length of database: 8,282,721
Effective search space: 3321371121
Effective search space used: 3321371121
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)