BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0710900 Os03g0710900|Os03g0710900
         (664 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18480.1  | chr3:6336924-6341596 FORWARD LENGTH=690            778   0.0  

>AT3G18480.1 | chr3:6336924-6341596 FORWARD LENGTH=690
          Length = 689

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/641 (62%), Positives = 482/641 (75%), Gaps = 25/641 (3%)

Query: 43  FWKDFDLEKERGGLDEQGLKIAENQETSQKNRRRLAESTRDFKKASSDDKLSLFNSLLKS 102
           FWK+FDLEKE+  LDEQGL+IAENQE SQKNRR+LAESTRDFKKAS ++KLS+FNSLLK 
Sbjct: 32  FWKEFDLEKEKSLLDEQGLRIAENQENSQKNRRKLAESTRDFKKASPENKLSMFNSLLKG 91

Query: 103 YQEEVDNLTKRAKFGENAFLNIYQKLYEAPDPYPALASMAEQDQKLSELETENRKMKLEL 162
           YQEEVDN+TKRAKFGENAFLNIYQKLYEAPDP+PALAS+AEQD+KLSE+E+ENRKMK+EL
Sbjct: 92  YQEEVDNITKRAKFGENAFLNIYQKLYEAPDPFPALASIAEQDRKLSEVESENRKMKVEL 151

Query: 163 EEYRAEAAHLKNQQATIXXXXXXXXXXXXXXXXXXXXXXXXXXRSLAEDSQKTLEALKDR 222
           EE+R EA HLKNQQATI                          R+LAE++QKT+E LKDR
Sbjct: 152 EEFRTEATHLKNQQATIRRLEERNRQLEQQMEEKIKEVVEIKQRNLAEENQKTMELLKDR 211

Query: 223 ERALQDQLRQATESVKNMQKLHESAQSQLFELRTQSEEDRAAKETEVNLLLDEVERAQAR 282
           E+ALQDQLRQA +SV  MQKLHE AQ+QLFELR QS+E+ A K++EV+LL+DEVERAQ R
Sbjct: 212 EQALQDQLRQAKDSVSTMQKLHELAQNQLFELRAQSDEETAGKQSEVSLLMDEVERAQTR 271

Query: 283 LVSLEREKGDLRSQLQTTNEDATN-SSDYVDSSDILESSLNAKEKIISELNAELRSIENT 341
           L++LEREKG LRSQLQT NED  N  SD +DS+ +LE+SL AKEKIISELN E+ ++E  
Sbjct: 272 LLTLEREKGHLRSQLQTANEDTDNKKSDNIDSNSMLENSLTAKEKIISELNMEIHNVETA 331

Query: 342 LSSERETHVNELKKLTALLSEKENALTELKKELQERPTRRLVDDLKKKVQILQAVGYNSI 401
           L++ERE+HV E+KKL +LL++K+  + E+KKELQERP+ +LVDDL+KKV+ILQAVGYNSI
Sbjct: 332 LANERESHVAEIKKLNSLLNKKDTIIEEMKKELQERPSAKLVDDLRKKVKILQAVGYNSI 391

Query: 402 EAEDWELATNGEEMSKLEALLLDKNRKMEHELTQLKVKISEKSNXXXXXXXXXXXXXXXX 461
           EAEDW+ AT GEEMSK+E+LLLDKNRKMEHE+TQLKV++SEK++                
Sbjct: 392 EAEDWDAATTGEEMSKMESLLLDKNRKMEHEVTQLKVQLSEKASLLEKAEAKGEELTAKV 451

Query: 462 XXQQXXXXXXXXXXXXGYSSTDRRTSLLNDWDLQEIGSNEVAEGTDPRHAPQDQDQSSML 521
             QQ            GY S +R+ +L ++W+  E G  E +E  D +H P +QDQSSML
Sbjct: 452 NEQQRLIQKLEDDILKGYGSKERKGALFDEWEFSEAGVAEQSEPMDQKHVPSEQDQSSML 511

Query: 522 KVICNQRDRFXXXXXXXXXXXXXXXXXYEMLVVELEKTKADNVQLYGKIRYVQDYSHEKI 581
           KVIC+QRDRF                    L  ELEKTKADNV+LYGKIRYVQDY+H+K+
Sbjct: 512 KVICSQRDRFRARLRETEEEIRRLKEKIGFLTDELEKTKADNVKLYGKIRYVQDYNHDKV 571

Query: 582 VSRGPKKYAEDVESG-SSDVETKYKKMYEDDINPFAAFSKKEKDQRYKELGLRDKITLSS 640
           VSRG KKY ED+ESG SSDVE+KYKK+YEDDINPFAAFSKKE++QR K+LG+RD+ITLSS
Sbjct: 572 VSRGSKKYVEDLESGFSSDVESKYKKIYEDDINPFAAFSKKEREQRIKDLGIRDRITLSS 631

Query: 641 GRFLLGNK-----------------------MSALSYLRYG 658
           GRFLLGNK                       MSA SYL +G
Sbjct: 632 GRFLLGNKYARTFAFFYTIGLHVLVFTCLYRMSAYSYLSHG 672



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.125    0.327 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,684,598
Number of extensions: 408732
Number of successful extensions: 2723
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 2762
Number of HSP's successfully gapped: 36
Length of query: 664
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 559
Effective length of database: 8,227,889
Effective search space: 4599389951
Effective search space used: 4599389951
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 115 (48.9 bits)