BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0707300 Os03g0707300|AK066944
(539 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G03560.1 | chr3:853153-856486 REVERSE LENGTH=522 346 2e-95
AT5G23490.1 | chr5:7919831-7926499 FORWARD LENGTH=730 223 2e-58
AT5G08440.2 | chr5:2721037-2726970 FORWARD LENGTH=773 200 2e-51
AT5G23510.2 | chr5:7927055-7929117 FORWARD LENGTH=307 146 3e-35
>AT3G03560.1 | chr3:853153-856486 REVERSE LENGTH=522
Length = 521
Score = 346 bits (888), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 209/531 (39%), Positives = 307/531 (57%), Gaps = 53/531 (9%)
Query: 47 NTDTLVRHQLQGASLQNDLTAEDSITRLM-DPETKGLYFRSRSQEEEILLLRKQIADASV 105
+++++ RH+++ ++ + ED+ T+L+ DPE LY + RSQEEEI L+++IA A +
Sbjct: 6 SSESIKRHEIEKDTIASR-KLEDTNTKLIQDPEEMALYAKVRSQEEEIHSLQERIAAACL 64
Query: 106 KELQLLSEKHILERKLFDLRMAVDEKQEDAISGALKQLSQKKGHVEENMRLANDLKGEEE 165
K++QLL+EK+ LERK DLR+A+DEKQ ++++ AL +L+++KG +EEN++LA+DLK E+
Sbjct: 65 KDMQLLNEKYGLERKCADLRVAIDEKQNESVTSALNELARRKGDLEENLKLAHDLKVTED 124
Query: 166 ELYFFTSSLLSMLAEYNVRPPQINASAITAGTKRLYHQMQWKIKYLNDSLGEIT-----Q 220
E Y F +SLL +LAEY V P NA+AI++G K L+ Q+QWK K ND + E++ Q
Sbjct: 125 ERYIFMTSLLGLLAEYGVWPRVANATAISSGIKHLHDQLQWKTKACNDRIRELSSIVENQ 184
Query: 221 PGHIY-NNPNHQ------QATPLRHEPSSSYNT---------DATRNNFHQYAQDPND-R 263
PG + + NH QA+ + + Y T + TRN +H QD R
Sbjct: 185 PGTDFISKDNHDPRNSKTQASYGSTDRGNDYQTNEQLLPPMENVTRNPYHNIMQDTESLR 244
Query: 264 NTGQMYHGS----------NYHQEIVAATPSNYFEENNGPREVRLDDSQFYR--QDNQEY 311
Q+ GS N+ + + +E RE + ++S + N+E+
Sbjct: 245 FNNQIGGGSQGIFPQPKRENFGYPLSSVAGKEMIQE----REEKAENSSMFDAYNGNEEF 300
Query: 312 SADD-DPLPGIEGFQIVGEPRPGFTLTACGFPTNGTTLCNFQWVRYLDNGTRQSIEGATM 370
++ + PGI+GFQI+G+ PG + CGFP GTTLC FQWVR+L++GTRQ IEGAT
Sbjct: 301 ASHVYEEGPGIDGFQIIGDAIPGEKVLGCGFPVRGTTLCMFQWVRHLEDGTRQYIEGATH 360
Query: 371 XXXXXXXXXXXXXXXXXCTPMDDNTRQGELVTEYANNGSKITCDPEMQNTIDMHISNGRA 430
C PMDD RQGELV +AN+ +KI CD EMQ ID +IS G+A
Sbjct: 361 PEYIVTADDVDKLIAVECIPMDDQGRQGELVRLFANDQNKIRCDTEMQTEIDTYISRGQA 420
Query: 431 HFNLLVLGYSSDEWELAILTLKRTGYHIKVK--DEVLTEEKYSSNLQTKIPNGRTTQFVL 488
FN+ +L SS+ WE A + LKR+ Y IK + V+ EKYS LQ ++P+G +TQFVL
Sbjct: 421 SFNVQLLMDSSESWEPATVVLKRSSYQIKTNTTEAVVISEKYSKELQIRVPSGESTQFVL 480
Query: 489 VSSGGVNIPFNTQGISEPNNEXXXXXXXXXXXXXXXTFQSKALDAKRKGKV 539
+S G + P +T + QSKALD +RKG+V
Sbjct: 481 ISYDGSSHPISTLNV----------RMRDTLVLTMRMLQSKALDERRKGRV 521
>AT5G23490.1 | chr5:7919831-7926499 FORWARD LENGTH=730
Length = 729
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 150/480 (31%), Positives = 239/480 (49%), Gaps = 71/480 (14%)
Query: 82 LYFRSRSQEEEILLLRKQIADASVKELQLLSEKHILERKLFDLRMAVDEKQEDAISGALK 141
L + + QE+EI LR+ + D SVKE Q+ +EK++LE+++ +R+A D++Q+D + + K
Sbjct: 206 LIHKVQEQEQEISQLRRYLTDCSVKEAQIRNEKYVLEKRIAYMRLAFDQQQQDLVDASSK 265
Query: 142 QLSQKKGHVEENMRLANDLKGEEEELYFFTSSLLSMLAEYNVRPPQINASAITAGTKRLY 201
LS ++ +EEN+RL L+ ++E F S LL +L+EY+++P +A +I + K L+
Sbjct: 266 ALSYRQEIIEENIRLTYALQATQQERSTFVSYLLPLLSEYSLQPQVSDAQSIVSNVKVLF 325
Query: 202 HQMQWKIKYLNDSLGEIT-QPGHIYNNPNHQQATPLRHEPSSSYN---TDATRNNFHQY- 256
+Q K+ L E Q ++ NH +PL PS S T +T+++ + +
Sbjct: 326 KHLQEKLLLTETKLKESEYQLAPWQSDVNHSNDSPLA--PSRSAGVALTHSTKDSMYSHD 383
Query: 257 --AQDPNDRNTGQMYHGS----NYHQE------------------------IVAATPSNY 286
A D N Q GS NYH + V +P++
Sbjct: 384 HTAIDWNLERQQQDEPGSSAVRNYHLDDSSTFSPLENSQSAAFEMHVQPGTSVDESPAHK 443
Query: 287 FEENNGPREVR---------LDDSQ---------------------FYRQDNQEYS--AD 314
+ P+ V+ +DD+Q + + + +S D
Sbjct: 444 KVDETPPKHVQFLEPISKTVVDDAQNPSYGSAFDDPSSSNSPLLSPVFEEPSSSFSEGGD 503
Query: 315 DDPLPGIEGFQIVGEPRPGFTLTACGFPTNGTTLCNFQWVRYLDNGTRQSIEGATMXXXX 374
DDPLPGIE QI GEP PG L ACG+ NGTT CNF+WV +L++G+ I+GA
Sbjct: 504 DDPLPGIEDLQISGEPYPGHELQACGYSINGTTSCNFEWVCHLEDGSVNYIDGAKQPNYL 563
Query: 375 XXXXXXXXXXXXXCTPMDDNTRQGELVTEYANNGSKITCDPEMQNTIDMHISNGRAHFNL 434
P+DD R+GELV +AN+ KI C P+MQ+ I+ + G A + +
Sbjct: 564 VTADDVDLYLAIEVQPLDDRNRKGELVKVFANDNRKIACHPDMQSNIEKTLHTGHASYKV 623
Query: 435 -LVLGYSSDEWELAILTLKRTGYHIKVKDEVLTEEKYSSNLQTKIPNGRTTQFVLVSSGG 493
L +G+ D WE A L++KR GY IK ++ EK+S++ IP G+ + V++ S G
Sbjct: 624 SLAVGF-VDIWEAATLSIKREGYSIKCISDLTIAEKFSASTTVTIPFGQPAELVIIGSDG 682
>AT5G08440.2 | chr5:2721037-2726970 FORWARD LENGTH=773
Length = 772
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 157/517 (30%), Positives = 238/517 (46%), Gaps = 116/517 (22%)
Query: 82 LYFRSRSQEEEILLLRKQIADASVKELQLLSEKHILERKLFDLRMAVDEKQEDAISGALK 141
L + + Q++EIL LRK +AD S KE+Q+ +EK++LE+++ +R A D++Q+D + A K
Sbjct: 219 LIHKVQEQDQEILRLRKYLADYSTKEVQIRNEKYVLEKRIAHMRSAFDQQQQDLVDAASK 278
Query: 142 QLSQKKGHVEENMRLANDLKGEEEELYFFTSSLLSMLAEYNVRPPQINASAITAGTK--- 198
LS ++ +EEN+RL L+ E+E F S LL +L+EY++ P ++ +I + K
Sbjct: 279 ALSYRQEIIEENIRLTYALQAAEQERSLFVSILLPLLSEYSLHPQISDSQSIVSSVKISL 338
Query: 199 -----RLYHQMQW----KIKYLNDS----------------LGEITQPGHIY-------- 225
+L+ W +K+L S LG + +
Sbjct: 339 AVYLRKLFTVAPWFLDVGVKFLCSSFPSQHVIDVYIIFRFYLGICRRSSMLLRYDMRTKL 398
Query: 226 -----------NNPNHQQATPLR-HEPSS---SYNTDATRNNFHQYAQDPNDRNTGQMYH 270
++ NH A+PL ++P Y+TD+ + HQ DR G
Sbjct: 399 KETEYQLAPWQSDVNHSNASPLSPYQPVGVGLRYSTDSEHH--HQ------DRRGGSA-- 448
Query: 271 GSNYHQE---------IVAATPSNYFEENNGP------RE----VRLDDSQFYRQ----- 306
SNYH + + P+ +E++GP RE +DD+ Q
Sbjct: 449 ASNYHLDGPESRSPAFQMPVQPALNQDESHGPNNRVQFREPLSNTFMDDAYADVQADSNT 508
Query: 307 --DNQEYSADDDP---------------------------LPGIEGFQIVGEPRPGFTLT 337
+N Y A DDP LPGI QI GEP PG L
Sbjct: 509 TLENSTYVAVDDPSPSNYPILAPVLEEPSSSFSEAADDDPLPGIADLQISGEPFPGRELQ 568
Query: 338 ACGFPTNGTTLCNFQWVRYLDNGTRQSIEGATMXXXXXXXXXXXXXXXXXCTPMDDNTRQ 397
G NGTT CNF+WVR+L++G+ I+GA P+DD R+
Sbjct: 569 VSGHSINGTTKCNFEWVRHLEDGSVNYIDGAKRPDYLVTADDVDLYLAIEVHPLDDKNRK 628
Query: 398 GELVTEYANNGSKITCDPEMQNTIDMHISNGRAHFNL-LVLGYSSDEWELAILTLKRTGY 456
GELV +AN KITC PEMQ+ I+ + NG A F + +GY D WE A L++K+ GY
Sbjct: 629 GELVRVFANENCKITCHPEMQSHIEKSLYNGHALFKVSYSIGY-LDIWEAATLSIKKEGY 687
Query: 457 HIKVKDEVLTEEKYSSNLQTKIPNGRTTQFVLVSSGG 493
IK ++ + EK+SS+ IP + FV++ + G
Sbjct: 688 SIKPTNDPVITEKFSSSTNIVIPFDQPADFVIIGTDG 724
>AT5G23510.2 | chr5:7927055-7929117 FORWARD LENGTH=307
Length = 306
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 106/192 (55%), Gaps = 7/192 (3%)
Query: 303 FYRQDNQEYSADDDPLPGIEGFQIVGEPRPGFTLTACGFPTNGTTLCNFQWVRYLDNGTR 362
FY D DD PLP +E QI GEP PG L ACG+ NGTT CNF+WV +L++G+
Sbjct: 73 FYFDD-----GDDAPLPALENLQISGEPYPGHELQACGYSINGTTSCNFEWVCHLEDGSV 127
Query: 363 QSIEGATMXXXXXXXXXXXXXXXXXCTPMDDNTRQGELVTEYANNGSKITCDPEMQNTID 422
I+GA P+DD R+GELV +AN+ KI C PEMQ+ ID
Sbjct: 128 NYIDGAKKPNYLVTADDVGLCLAIEVQPLDDRNRKGELVKVFANDNRKIACHPEMQSNID 187
Query: 423 MHISNGRAHFNL-LVLGYSSDEWELAILTLKRTGYHIKVKDEVLTEEKYSSNLQTKIPNG 481
+ G A + + L +G+ WE A L+++R GY IK +++ EK+S++ KIP
Sbjct: 188 KTLHTGHASYKVSLAIGFVH-IWEAATLSIEREGYTIKCNNDLTITEKFSASTAVKIPFE 246
Query: 482 RTTQFVLVSSGG 493
+ + V++ S G
Sbjct: 247 KPAELVIIGSDG 258
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,841,353
Number of extensions: 517969
Number of successful extensions: 1147
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1138
Number of HSP's successfully gapped: 6
Length of query: 539
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 436
Effective length of database: 8,282,721
Effective search space: 3611266356
Effective search space used: 3611266356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)