BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0703900 Os03g0703900|AK073877
(277 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G09580.1 | chr4:6052721-6054313 REVERSE LENGTH=288 354 3e-98
AT1G71940.2 | chr1:27078781-27080191 FORWARD LENGTH=307 323 6e-89
AT4G17790.1 | chr4:9891425-9892675 FORWARD LENGTH=265 305 2e-83
AT4G22850.1 | chr4:11994194-11995941 FORWARD LENGTH=297 55 6e-08
AT1G03260.1 | chr1:795678-798102 REVERSE LENGTH=275 50 1e-06
>AT4G09580.1 | chr4:6052721-6054313 REVERSE LENGTH=288
Length = 287
Score = 354 bits (908), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 168/255 (65%), Positives = 213/255 (83%), Gaps = 5/255 (1%)
Query: 23 PAAKRGKPEAAGARPSLTRTEXXXXXSVLVLFLVGIFCVFRAAPRREFEQILRLPRSLAD 82
P KR K E R L+R E +V ++F G+FC++ P E+ + L++PR+++D
Sbjct: 38 PTGKRTKSE----RFPLSRWEFAVFFTVFLVFTTGLFCIYLTMPAAEYGK-LKVPRTISD 92
Query: 83 VRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGTIFMSLLAGALFGVVKGGILVVF 142
+RLLK+NL YA +YQA FILGYCS YIFMQTFMIPGTIFMSLLAGALFGVV+G +LVV
Sbjct: 93 LRLLKENLGSYASEYQARFILGYCSTYIFMQTFMIPGTIFMSLLAGALFGVVRGFVLVVL 152
Query: 143 TATAGASSCYFVSKLIGRPLISWLWPEKLRYFQSEIAKRKEKLLNYMLFLRITPTLPNTF 202
ATAGA SC+F+SKL+GRPL++WLWPEKLR+FQ+EIAKR+++LLNYMLFLRITPTLPN F
Sbjct: 153 NATAGACSCFFLSKLVGRPLVNWLWPEKLRFFQAEIAKRRDRLLNYMLFLRITPTLPNLF 212
Query: 203 INMASPIVDIPFHIFFAATLIGLIPASYITVKAGRALGDLRSLRELYDSKTLVILFLIGT 262
IN++SPIVDIPFH+FF ATL+GL+PASYITV+AG ALGDLRS+++LYD KTL +LFLIG+
Sbjct: 213 INLSSPIVDIPFHVFFLATLVGLMPASYITVRAGLALGDLRSVKDLYDFKTLSVLFLIGS 272
Query: 263 VAVAPTILKRKRIYE 277
+++ P +LKRKR+YE
Sbjct: 273 ISIFPALLKRKRVYE 287
>AT1G71940.2 | chr1:27078781-27080191 FORWARD LENGTH=307
Length = 306
Score = 323 bits (828), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 157/231 (67%), Positives = 192/231 (83%), Gaps = 5/231 (2%)
Query: 23 PAAKRGKPEAAGARPSLTRTEXXXXXSVLVLFLVGIFCVFRAAPRREFEQILRLPRSLAD 82
P+ KR K + R L+R E V ++F G+ C++ P EF + L+LPRSLAD
Sbjct: 23 PSGKRSKLD----RFPLSRWELAVSLGVFLVFSSGLCCIYMTMPAAEFGK-LKLPRSLAD 77
Query: 83 VRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGTIFMSLLAGALFGVVKGGILVVF 142
+RLLKDNLA YA +Y A F+LGYC+ YIFMQTFMIPGTIFMSLLAGALFGV KG +LVVF
Sbjct: 78 LRLLKDNLANYANEYPAQFVLGYCATYIFMQTFMIPGTIFMSLLAGALFGVFKGVVLVVF 137
Query: 143 TATAGASSCYFVSKLIGRPLISWLWPEKLRYFQSEIAKRKEKLLNYMLFLRITPTLPNTF 202
ATAGA+SC+F+SKLIGRPLI+WLWP+KLR+FQ+EI+KR++KLLNYMLFLRITPTLPN F
Sbjct: 138 NATAGATSCFFLSKLIGRPLITWLWPDKLRFFQAEISKRRDKLLNYMLFLRITPTLPNLF 197
Query: 203 INMASPIVDIPFHIFFAATLIGLIPASYITVKAGRALGDLRSLRELYDSKT 253
IN+ASPIVD+PFH+FF ATLIGLIPA+YITV+AG A+GDL+S+++LYD KT
Sbjct: 198 INLASPIVDVPFHVFFLATLIGLIPAAYITVRAGLAIGDLKSVKDLYDFKT 248
>AT4G17790.1 | chr4:9891425-9892675 FORWARD LENGTH=265
Length = 264
Score = 305 bits (781), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 142/237 (59%), Positives = 192/237 (81%), Gaps = 1/237 (0%)
Query: 38 SLTRTEXXXXXSVLVLFLVGIFCVFRAAPRREFEQILRLPRSLADVRLLKDNLAVYARDY 97
SL+ E V++ F++G+ CV+ P+ ++ L+LPR+L D+++L+DNL +Y DY
Sbjct: 28 SLSFWEVTAASGVVLGFILGLVCVYLTMPQSDYS-FLKLPRNLEDLQILRDNLEIYTSDY 86
Query: 98 QANFILGYCSIYIFMQTFMIPGTIFMSLLAGALFGVVKGGILVVFTATAGASSCYFVSKL 157
++GYC +Y+FMQTFMIPGT+FMSLLAGALFGVVKG LVV TATAGASSCYF+SKL
Sbjct: 87 TVQVLVGYCLVYVFMQTFMIPGTVFMSLLAGALFGVVKGMALVVSTATAGASSCYFLSKL 146
Query: 158 IGRPLISWLWPEKLRYFQSEIAKRKEKLLNYMLFLRITPTLPNTFINMASPIVDIPFHIF 217
IGRPL+ LWP+KL +FQ ++A+RK++LLNYMLFLR+TPTLPNTFIN+ASPIVD+P+HIF
Sbjct: 147 IGRPLLFSLWPDKLVFFQDQVARRKDRLLNYMLFLRLTPTLPNTFINVASPIVDVPYHIF 206
Query: 218 FAATLIGLIPASYITVKAGRALGDLRSLRELYDSKTLVILFLIGTVAVAPTILKRKR 274
F AT IGLIPA+++TV+AG ALG+L+SL +LYD ++ L LIG ++V PT++ +K+
Sbjct: 207 FLATFIGLIPAAFVTVRAGLALGELKSLGDLYDFSSMATLCLIGVLSVTPTLIGKKQ 263
>AT4G22850.1 | chr4:11994194-11995941 FORWARD LENGTH=297
Length = 296
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 13/180 (7%)
Query: 102 ILGYCSIYIFMQTFMIPGTIFMSLLAGALFGVVKGGILVVFTATAGASSCYFVSKLIGRP 161
+L + S+ IF T ++P T M +AG FG G +L++ A G S YF+ +L
Sbjct: 104 LLVFASVAIF-PTILLPSTPSM-WIAGMTFGYGYGFLLIISAAAVGVSLPYFIGQLFCHK 161
Query: 162 LISWL--WPEKLRYFQSEIAKRKEKLLNYML--FLRITPTLPNTFINMASPIVDIPFHIF 217
+ WL +P++ ++ A L ++L +RI+P P N S + + +
Sbjct: 162 IQGWLERYPDQAAVLRA--AGEGNWLHQFLLVTLIRISP-FPYILYNYCSVATRVKYGPY 218
Query: 218 FAATLIGLIPASYITVKAG---RALGDLRSLRELYDSKTLVILFLIGTVA-VAPTILKRK 273
+L+G++P ++ + G R L + S E S T VIL ++G +A VA TIL K
Sbjct: 219 ITGSLLGMVPEVFVAIYTGILVRTLAEASSAEEQGLSVTQVILNILGFLATVATTILITK 278
>AT1G03260.1 | chr1:795678-798102 REVERSE LENGTH=275
Length = 274
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 8/165 (4%)
Query: 86 LKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGTIFMSLLAGALFGVVKGGILVVFTAT 145
LKD L D L YI + +P ++ ++L G LFG+ G + AT
Sbjct: 36 LKDFLLWIKEDLGPFGPLALALAYIPLTIVAVPASV-LTLGGGYLFGLPVGFVADSLGAT 94
Query: 146 AGASSCYFVSKLIGRPLISWLWPEKLRY---FQSEIAKRKEKLLNYMLFLRITPTLPNTF 202
GA++ + + + IG+ ++ K+++ FQ+ ++ +L LR+ P LP
Sbjct: 95 LGATAAFLLGRTIGKSYVT----SKIKHYPKFQAVSVAIQKSGFKIVLLLRVVPILPFNM 150
Query: 203 INMASPIVDIPFHIFFAATLIGLIPASYITVKAGRALGDLRSLRE 247
+N + + + AT +G++P ++ V G L DL +
Sbjct: 151 LNYLLSVTPVRLGEYMLATWLGMMPITFALVYVGTTLKDLSDITH 195
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.144 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,039,487
Number of extensions: 188612
Number of successful extensions: 547
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 7
Length of query: 277
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 180
Effective length of database: 8,447,217
Effective search space: 1520499060
Effective search space used: 1520499060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 111 (47.4 bits)